an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

1-piperideine-2-carboxylate

(2E)-2-hydroxypenta-2,4-dienoate

1-pyrroline

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

picolinate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-aminopentanoate

4-oxoglutaramate

S-ribosyl-L-homocysteine

autoinducer 2

pyruvic oxime

vanillin

selenodiglutathione

glutathioselenol

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

mercuriphenyl acetate

5-amino-6-(5-phospho-D-ribitylamino)uracil

isopropylamine

N-ethylammelide

hydrogen selenide

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

(2Z,4E)-2-aminomuconate

N-Formyl-L-kynurenine

thiamine diphosphate

5,6-dimethylbenzimidazole

7,8-diaminopelargonate

pimeloyl-CoA

8-amino-7-oxononanoate

α-ribazole 5'-phosphate

α-ribazole

3-mercaptopyruvate

L-gulono-1,4-lactone

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

glutathione disulfide

D-gluconate 6-phosphate

acetyl phosphate

N,N-dimethyl-1,4-phenylenediamine

(4-hydroxyphenyl)acetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

L-selenocystathionine

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

2,4'-dihydroxyacetophenone

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

S-adenosyl 3-(methylsulfanyl)propylamine

N-acetyl-D-muramate 6-phosphate

quinolinate

7-carboxy-7-deazaguanine

3-amino-1-hydroxyacetone 1-phosphate

2-protocatechuoylphloroglucinolcarboxylate

4-imidazolone-5-propanoate

urocanate

2-phosphoglycolate

deethylsimazine

N-ethylammeline

5-(methylsulfanyl)-ribulose 1-phosphate

3-dehydroquinate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-carboxymethyl-2-hydroxymuconate

(4Z)-2-oxohept-4-enedioate

(4S)-4-hydroxy-2-oxoheptanedioate

5-dehydro-4-deoxy-D-glucarate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

salicyl alcohol

methylsalicylate

2,5-dioxopentanoate

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-ureidoglycolate

hydroxyatrazine

N-isopropylammelide

ethylamine

hydroxypyruvate

N-carbamoylputrescine

O-acetyl-L-serine

selenophosphate

anthranilate

carbonic acid

β-D-ribosylnicotinate

shikimate

3-dehydroshikimate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

ADP-L-glycero-β-D-manno-heptose

hydrogenobyrinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

hydrogenobyrinate a,c-diamide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

formamide

lipid IV_A

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

S-formylglutathione

lipid X

lipid A disaccharide (E. coli)

2-C-methyl-D-erythritol 4-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

6-amino-2-oxohexanoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

γ-L-glutamyl 5-phosphate

(R)-pantothenate

β-nicotinate D-ribonucleotide

tartronate semialdehyde

oxalosuccinate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

orotidine 5'-phosphate

(R)-4-phosphopantoate

(R)-4'-phosphopantothenate

4-(γ-L-glutamylamino)butanal

xanthine

L-arginino-succinate

canavaninosuccinate

L-canavanine

preuroporphyrinogen

glycolate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

O-ureido-L-homoserine

D-erythro-imidazole-glycerol-phosphate

5-phospho-β-D-ribosylamine

N-(5-phosphoribosyl)-anthranilate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

N²-succinylglutamate

2-maleylacetate

5-aminolevulinate

porphobilinogen

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

4-(γ-L-glutamylamino)butanoate

4-fumaryl-acetoacetate

3-phosphooxypyruvate

ethanolamine

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

4'-phosphopantetheine

coniferaldehyde

2-iminoacetate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

dethiobiotin

(S)-dihydroorotate

urea

2-oxopent-4-enoate

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

4-hydroxy-2-nonenal

(S)-4-amino-5-oxopentanoate

2-aminoacetaldehyde

(indol-3-yl)pyruvate

DNA without lesion

urea-1-carboxylate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

histidinal

histidinol

imidazole acetol-phosphate

L-histidinol phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

4-maleyl-acetoacetate

homogentisate

(2-hydroxyphenyl)acetate

propanoyl phosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

nicotinate adenine dinucleotide

2,3-didehydroadipyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3-methylmuconolactone

muconolactone

(+)-muconolactone

cis,cis-muconate

propane-1,3-diamine

α-D-glucosamine 1-phosphate

ammonia

hydroxylamine

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

oxaloacetate

citrate

3-methyl-2-oxobutanoate

2-dehydropantoate

5-oxo-L-proline

isopentenyl diphosphate

acetoacetate

hydrogen peroxide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

carboxyphosphate

glycerone phosphate

prephenate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

6-phospho D-glucono-1,5-lactone

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

phosphoenolpyruvate

4-amino-4-deoxychorismate

coproporphyrinogen III

prenyl diphosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

carbamoyl phosphate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

CO₂

H₂O

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cobyrinate

adenosylcobyrate

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(II)yrinate a,c-diamide

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

hemin

protoheme

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

siroheme

Hg⁰

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

CMP-N-acetyl-β-neuraminate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

acrylonitrile

preQ₀

2-nitrobenzoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

H⁺

K⁺

ammonium

Co²⁺

Fe²⁺

Hg²⁺

Mg²⁺

Zn²⁺

Cu²⁺

Mo²⁺

hydrogensulfite

selenite

OH^-

nitrite

thiosulfate

selenide

superoxide

selenate

hydrogencarbonate

sulfite

nitrate

molybdate

sulfate

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

glycine betaine

betaine aldehyde

choline

choline sulfate

aniline

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

4-aminobutanal

N-acetylputrescine

cadaverine

putrescine

spermidine

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

taurine

3-(N-morpholino)propanesulfonate

1-butanesulfonate

isethionate

dodecyl sulfate

(R)-S-lactoylglutathione

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

methylacrylyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3'-dephospho-CoA

3-methylglutaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(3S)-hydroxyadipyl-CoA

phenylacetyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

succinyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

phytanoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

butanoyl-CoA

propanoyl-CoA

lauroyl-CoA

octanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

nicotinate

riboflavin

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxal

pyridoxal 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

FAD

FADH₂

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

3-demethylubiquinol-8

N,N-dimethylglycine

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-AMP

dIDP

dITP

IDP

2'-deoxyguanosine

adenylo-succinate

pppGpp

XMP

cyclic-AMP

dGMP

GMP

dAMP

ITP

dGTP

dGDP

dATP

dADP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

ppGpp

GDP

GTP

hypoxanthine

IMP

AMP

ADP

ATP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

xanthosine

guanosine

inosine

adenosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dUDP

dCDP

dTDP

CDP

UDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

GDP-α-D-mannuronate

preQ₁

thymine

uracil

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-3B

precorrin-6A

precorrin-2

precorrin-3A

precorrin-6B

precorrin-7

precorrin-8x

precorrin-4

precorrin-5

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydromonapterin

7,8-dihydromonapterin triphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-4a-hydroxy-tetrahydrobiopterin

5,6,7,8-tetrahydromonapterin

6-carboxy-5,6,7,8-tetrahydropterin

orotate

quercetin

2-hydroxylaminobenzoate

cyanuric acid

urate

4-hydroxyacetophenone

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

benzene

atrazine

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

2,3-dihydroxybenzoate

3,4-dihydroxyphenylacetate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

catechol

protocatechuate

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

ferulate

salicylate

vanillate

4-aminobenzoate

benzoate

diacetyl

methylglyoxal

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

formaldehyde

acetaldehyde

butan-1-al

D-glyceraldehyde

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

methanol

ethanol

1-octanol

1-dodecanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

3,5-cyclohexadiene-1,2-diol-1-carboxylate

1-(β-D ribofuranosyl)nicotinamide

α-Kdo-(2→6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

neoagarobiose

neoagarotetraose

neoagarohexaose

agaropentaose

agarotriose

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

3,6-anhydro-L-galactofuranose

3,6-anhydro-α-L-galactopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

L-gulonate

D-gluconate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(3E)-2-oxohex-3-enedioate

chorismate

succinate

L-aspartate

fumarate

(S)-malate

D-glucarate

D-galactarate

α,ω-9Z-octadecenedioate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

acetate

formate

propanoate

(R)-lactate

octanoate

7-hydroxylaurate

laurate

decanoate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

palmitate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

phytenate

(R)-pantoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-kynurenine

carbamate

L-serine

L-tyrosine

glycine

L-threonine

L-glutamine

L-cysteine

L-lysine

L-histidine

L-arginine

L-glutamate

L-valine

L-selenocysteine

L-isoleucine

L-proline

L-tryptophan

L-phenylalanine

L-alanine

L-leucine

L-methionine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-cysteine

cis-4-hydroxy-D-proline

D-lysine

D-alanine

L-isoglutamine

L-cystathionine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

D-nopaline

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

sarcosine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N⁵-hydroxy-L-ornithine

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

L-proline betaine

D-proline betaine

O-acetyl-L-homoserine

N-methyl-L-proline

L-citrulline

L-glutamate-5-semialdehyde

L-canaline

O-succinyl-L-homoserine

L-cystine

hypoglycin A

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B