an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

anthranilate

prephenate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

α-D-glucosamine 1-phosphate

1,6-anhydro-N-acetyl-β-muramate

hydrogen peroxide

ethanolamine

(S)-dihydroorotate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

CDP-glycerol

2-keto-D-gluconate

2,5-didehydro-D-gluconate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-keto-L-gulonate 6-phosphate

N-acetyl-D-muramate 6-phosphate

2-dehydropantoate

chloroacetaldehyde

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

oxaloacetate

citrate

2-dehydro-3-deoxy-D-gluconate

(R)-mevalonate diphosphate

thiamine diphosphate

propanoyl phosphate

glutathione disulfide

4-fumaryl-acetoacetate

acetoacetate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

4-hydroxy-2-nonenal

quercitrin

salicyl alcohol

3-phosphooxypyruvate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

DNA without lesion

2-phosphoglycolate

glycolate

acetyl phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

β-D-ribosylnicotinate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

5-methylcytosine

1,4-dihydroxy-2-naphthoate

carbamoyl phosphate

carboxyphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

(indol-3-yl)pyruvate

5-enolpyruvoyl-shikimate 3-phosphate

xanthine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

isopentenyl diphosphate

coproporphyrinogen III

glycerone phosphate

phosphoenolpyruvate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

orotidine 5'-phosphate

CO₂

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

N-(5-phosphoribosyl)-anthranilate

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

prostaglandin F_2α

prostaglandin D₂

ethylphosphate

adenosylcobalamin

cob(I)alamin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-3-hydroxy-isobutanoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

demethylmenaquinol-8

NADH

NADPH

NAD⁺

NADP⁺

(2E,6E)-farnesyl diphosphate

ammonium

H⁺

Fe²⁺

Zn²⁺

Cu²⁺

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

glutathione

L-cysteate

3-sulfopyruvate

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

spermidine

spermine

putrescine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

hydroquinone

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

quercetin

quercetin-3-glucoside

rutin

hesperidin

naringin

hesperitin-7-O-β-D-glucoside

prunin

2,3-dihydroxybenzoate

preQ₀

coenzyme A

nicotinamide

thiamine

riboflavin

nicotinate

pyridoxine

pyridoxine 5'-phosphate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

glycocholate

cholate

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

acetyl-CoA

propanoyl-CoA

lauroyl-CoA

stearoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

chorismate

(4S)-4-hydroxy-2-oxoglutarate

L-aspartate

fumarate

pyruvate

acetate

formate

(R)-lactate

(S)-lactate

laurate

stearate

palmitate

orotate

(R)-pantoate

D-mannonate

(S)-1-pyrroline-5-carboxylate

4-deoxy-L-threo-hex-4-enopyranuronate

carbamate

L-serine

L-leucine

L-proline

L-alanine

L-glutamine

glycine

D-glutamate

L-glutamate

L-tyrosine

L-phenylalanine

L-tryptophan

D-aspartate

D-alanine

3-phospho-L-serine

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

L-methionine

L-ornithine

L-asparagine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

meso-diaminopimelate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycerol

methanol

ethanol

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

unsaturated gellan tetrasaccharide

isoprimeverose

selaginose

raffinose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

stachyose

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

α,α-trehalose

β-D-fructofuranose

β-L-rhamnopyranose

D-ribulose

L-ribulose

α-D-xylopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

diacetyl

(S)-acetoin

(R)-acetoin

acetaldehyde

(S)-lactaldehyde

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCTP

dTTP

UTP

CTP

dUTP

dTDP

cytosine

uracil

uridine 3'-monophosphate

cytidine-3'-monophosphate

CDP

dCMP

dCDP

UDP

dTMP

dUMP

5-fluorouracil

CMP

UMP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

adenine

hypoxanthine

guanine

preQ₁

xanthosine

guanosine

adenosine

inosine

2'-deoxyadenosine

2'-deoxyinosine

GTP

ATP

GDP

ADP

GMP

XMP

IMP

AMP

dGTP

dATP

dGDP

dADP

reduced riboflavin

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

pppGpp

ppGpp

adenylo-succinate

5'-deoxyadenosine

5-fluorocytosine

cyclic di-3',5'-guanylate

β-nicotinamide D-ribonucleotide