an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

bisorganyltrisulfane

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

selenodiglutathione

glutathioselenol

hydrogen selenide

glutathione disulfide

(R)-4'-phosphopantothenate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

urea

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

carboxyphosphate

α-D-glucosamine 1-phosphate

(S)-mandelate

(R)-mandelate

2,5-diaminohexanoate

L-β-lysine

dihydroxyacetone

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-pantothenate

2-dehydropantoate

3-ureidopropanoate

5-oxo-L-proline

(R)-1-aminopropan-2-ol

propanoyl phosphate

isopentenyl diphosphate

prenyl diphosphate

selenophosphate

L-canavanine

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

quercitrin

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

L-tartrate

3-deoxy-D-arabino-heptulosonate 7-phosphate

carbonic acid

2-phosphoglycolate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

prephenate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol 4-phosphate

O-acetyl-L-serine

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

chloramphenicol

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(R)-2,3-dihydroxy-3-methylpentanoate

thiamine phosphate

thiamine diphosphate

L-arginino-succinate

canavaninosuccinate

N-acetylglutamyl-phosphate

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

N-acetyl-L-glutamate 5-semialdehyde

quinolinate

4'-phosphopantetheine

histidinal

ethanolamine

acetoacetate

citrate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

(2S)-2-isopropylmalate

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-β-D-glucuronide

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

O-ureido-L-homoserine

carbamoyl phosphate

γ-L-glutamyl 5-phosphate

orotidine 5'-phosphate

(S)-dihydroorotate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

hydrogenobyrinate a,c-diamide

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

(R)-1-amino-2-propanol O-2-phosphate

hydrogenobyrinate

preuroporphyrinogen

porphobilinogen

histidinol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

D-erythro-imidazole-glycerol-phosphate

hydrogen peroxide

glycolate

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

H₂

nicotinate adenine dinucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

phloretin

phloroglucinol

phloretate

coproporphyrinogen III

acetyl phosphate

aminoacetone

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

xanthine

DNA without lesion

imidazole acetol-phosphate

L-histidinol phosphate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

N-(5-phosphoribosyl)-anthranilate

anthranilate

L-quinate

3-dehydroquinate

shikimate

3-dehydroshikimate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

oxaloacetate

CO₂

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

phosphoenolpyruvate

H₂O

butanoyl phosphate

glycerone phosphate

4-nitrophenol

chloramphenicol 3-acetate

p-nitrophenyl-α-L-rhamnopyranoside

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2-chloroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

sulfate

hydrogensulfite

selenite

sulfite

selenide

hydrogencarbonate

selenate

phosphate

triphosphate

diphosphate

chloride

Na⁺

H⁺

ammonium

Fe²⁺

Co²⁺

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

S-methyl-L-methionine

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-methylacetoacetyl-CoA

(S)-3-aminobutanoyl-CoA

malonyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

(3S)-citryl-CoA

succinyl-CoA

acetyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

CoA-disulfide

crotonyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

glycocholate

cholate

thiamine

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

1-(5-phospho-β-D-ribosyl)-AMP

dGDP

dATP

dADP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

dGTP

XMP

IMP

GMP

5'-deoxyadenosine

cyclic-AMP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

pppGpp

ppGpp

GTP

GDP

AMP

ATP

ADP

(R)-NADPHX

(S)-NADPHX

inosine

xanthosine

guanosine

adenosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

dCTP

dTTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dUDP

dTDP

dCDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

ADP-α-D-glucose

thymine

uracil

guanine

adenine

preQ₁

5,6-dihydrouracil

5,6-dihydrothymine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

coenzyme A

adenylyl molybdenum cofactor

bis(molybdenum cofactor)

bis(guanylyl molybdopterin) cofactor

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

orotate

precorrin-7

precorrin-5

cobalt-precorrin-2

precorrin-3A

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

precorrin-3B

precorrin-4

precorrin-6B

precorrin-6A

precorrin-8x

precorrin-1

precorrin-2

sirohydrochlorin

cobyrinate

adenosylcobalamin

cob(I)alamin

hydantoin

luteolin

quercetin

quercetin-3-glucoside

rutin

hesperidin

naringin

prunin

hesperitin-7-O-β-D-glucoside

4-methylphenol

2,3-dihydroxybenzoate

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

methylglyoxal

diacetyl

D-glyceraldehyde

β-L-rhamnopyranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-al

acetaldehyde

(S)-lactaldehyde

butan-1-ol

glycerol

raffinose

stachyose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-ribulose

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

pyruvate

acetate

formate

propanoate

(R)-lactate

butanoate

leukotriene-D4

leukotriene-E4

(R)-pantoate

β-D-glucuronate

carbamate

D-lysine

D-aspartate

D-alanine

D-glutamate

L-tryptophan

L-tyrosine

L-histidine

L-phenylalanine

L-cystathionine

L-ornithine

L-serine

L-aspartate

L-lysine

L-proline

L-arginine

L-asparagine

L-alanine

L-isoleucine

L-leucine

L-valine

L-glutamine

L-glutamate

L-threonine

L-aspartyl-4-phosphate

L-methionine

L-cysteine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-2-amino-3-oxobutanoate

L-threonine 3-O-phosphate

3-phospho-L-serine

N-carbamoylglycine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

O-phospho-L-homoserine

L-homoserine

O-succinyl-L-homoserine

L-canaline

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

L-homocysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

meso-diaminopimelate

glycine

(R)-β-lysine

β-alanine

(R)-3-amino-2-methylpropanoate

chorismate

fumarate

succinate

3-(carbamoylamino)-2-methylpropanoate

cis-aconitate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

DNA with lesion

N₂

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

cob(I)inamide

cobalt-sirohydrochlorin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

preQ₀