an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

S-ribosyl-L-homocysteine

autoinducer 2

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

orotidine 5'-phosphate

glutathione disulfide

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-deoxy-α-D-manno-2-octulosonate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

preuroporphyrinogen

histidinal

3-oxo-3-phenylpropanoyl-CoA

(S)-1-phenylethanol

(R)-4'-phosphopantothenate

urea

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

2-dehydropantoate

(R)-pantothenate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

porphobilinogen

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

carboxynorspermidine

norspermidine

(S)-2-amino-6-oxohexanoate

N⁵-carboxyaminoimidazole ribonucleotide

dethiobiotin

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

cyclohex-1,5-diene-1-carbonyl-CoA

coenzyme B

CoB-CoM heterodisulfide

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

α-D-ribose 1,5-bisphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

3-amino-1-hydroxyacetone 1-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

nicotinate adenine dinucleotide

3-phosphooxypyruvate

L-arginino-succinate

canavaninosuccinate

L-canavanine

(S)-dihydroorotate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

(R)-4'-phosphopantothenoyl-L-cysteine

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

histidinol

H₂

methanophenazine

dihydromethanophenazine

L-histidinol phosphate

selenophosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

coproporphyrinogen III

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

3-deoxy-D-manno-octulosonate 8-phosphate

DNA without lesion

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

quinolinate

phenyl phosphate

carbonic acid

hydrogenobyrinate a,c-diamide

hydrogen peroxide

7-carboxy-7-deazaguanine

N-acetylglutamyl-phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

hydrogen selenide

O-acetyl-L-serine

oxaloacetate

carbamoyl phosphate

carboxyphosphate

4'-phosphopantetheine

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

glycerone phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

γ-L-glutamyl 5-phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

H₂O

oxalosuccinate

phosphoenolpyruvate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

CO₂

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

2-octaprenylphenol

L-homocysteine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

DNA with lesion

phenylacetate

cob(II)yrinate a,c-diamide

Mg-protoporphyrin

protoheme

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

oxygen

hydrogen sulfide

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

ω-saturated C55 dolichol phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

CMP-N-acetyl-β-neuraminate

preQ₀

N-acetyl-β-neuraminate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

ammonium

K⁺

H⁺

Mo²⁺

Fe²⁺

Co²⁺

Mg²⁺

OH^-

selenide

superoxide

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

hydroxyl radical

pristanate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

glutathione

coenzyme M

L-cysteate

3-sulfopyruvate

benzoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

phenylacetyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

4-hydroxybutanoyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

succinyl-CoA

crotonyl-CoA

phytenoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

menadione

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-ATP

2'-deoxyguanosine

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-AMP

hypoxanthine

5'-deoxyadenosine

dGTP

dGDP

dATP

dADP

GMP

XMP

IMP

adenylo-succinate

GTP

GDP

AMP

ATP

ADP

guanosine

adenosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dCTP

dTTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dCDP

dUDP

CDP

UDP

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

ADP-α-D-glucose

preQ₁

uracil

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

tetrahydrosarcinapterin

5-methyl-tetrahydrosarcinapterin

coenzyme A

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

ethylbenzene

acetophenone

3-oxo-3-phenylpropanoate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

diacetyl

formaldehyde

acetaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

α-D-galactopyranose

methanol

ethanol

1D-myo-inositol 3-monophosphate

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

α-D-ribose-1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

chorismate

fumarate

L-aspartate

succinate

(S)-malate

α,ω-9Z-octadecenedioate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

2-oxobutanoate

pyruvate

2-oxoglutarate

propanoate

acetate

formate

decanoate

7-hydroxylaurate

laurate

octanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

(R)-pantoate

carbamate

L-serine

L-cysteine

L-threonine

L-tyrosine

L-glutamine

glycine

L-histidine

L-lysine

L-arginine

L-glutamate

L-methionine

L-proline

L-valine

L-leucine

L-selenocysteine

L-phenylalanine

L-alanine

L-isoleucine

L-tryptophan

β-alanine

D-glutamate

D-alanine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-saccharopine

3-phospho-L-serine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

L-citrulline

L-canaline

L-homoserine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

meso-diaminopimelate

D-alanyl-D-alanine