an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-dihydroorotate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

H₂O

12-methyltetradecanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-dehydroshikimate

glucosyl-4,4'-diaponeurosporenoate

autoinducer 2

shikimate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2-maleylacetate

1,4-dihydroxy-2-naphthoyl-CoA

tartronate semialdehyde

3-deoxy-D-glycero-2,5-hexodiulosonate

CO₂

D-gluconate 6-phosphate

S-ribosyl-L-homocysteine

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

carbamoyl phosphate

carboxyphosphate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

oxalosuccinate

acetyl phosphate

phosphoenolpyruvate

glycerone phosphate

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

formate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

butanoyl phosphate

coproporphyrinogen III

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

glycolate

salicyl alcohol

6-phospho D-glucono-1,5-lactone

xanthine

N-(5-phosphoribosyl)-anthranilate

(R)-4'-phosphopantothenate

(R)-pantothenate

selenophosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoate

hydrogen peroxide

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

O-acetyl-L-serine

methylsalicylate

5-amino-6-(D-ribitylamino)uracil

O-ureido-L-homoserine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(2S)-4-acetamido-2-aminobutanoate

ectoine

prephenate

carbonic acid

urea

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

N-acetyl-D-muramate 6-phosphate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

4,5-dihydroxyphthalate

prenyl diphosphate

15-cis-4,4'-diapophytoene

DNA without lesion

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

thiamine diphosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

acetoacetate

4-fumaryl-acetoacetate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-dehydro-3-deoxy-D-gluconate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

5-dehydro-D-gluconate

(2R,3S)-3-methylmalate

citraconate

2-isopropylmaleate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

(indol-3-yl)pyruvate

orotidine 5'-phosphate

5-phospho-β-D-ribosylamine

propanoyl phosphate

(S)-2,3-dihydrodipicolinate

shikimate 3-phosphate

oxaloacetate

2-dehydropantoate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

isopentenyl diphosphate

ethanolamine

4-methyl-2-oxopentanoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

histidinal

histidinol

L-histidinol phosphate

(2S)-2-isopropyl-3-oxosuccinate

L-arginino-succinate

presqualene diphosphate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

glutathione disulfide

anthranilate

N⁵-carboxyaminoimidazole ribonucleotide

choline

glycolaldehyde

α-D-galactopyranose

β-L-rhamnopyranose

α-L-rhamnopyranose

D-glyceraldehyde

methylglyoxal

(S)-lactaldehyde

butan-1-al

acetaldehyde

formaldehyde

caldariellaquinone

diacetyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

salicylate

protocatechuate

2,3-dihydroxybenzoate

baicalein

6,7-dehydrobaicalein

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

caldariellaquinol

demethylmenaquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

(2E,6E)-farnesyl diphosphate

tetraprenyl-β-curcumene

all-trans-retinyl palmitate

all-trans-retinol

all-trans-4,4'-diaponeurosporene

all-trans-4,4'-diapo-ζ-carotene

all-trans-4,4'-diapophytofluene

4,4'-diaponeurosporenal

4,4'-diaponeurosporenoate

all-trans-4,4'-diapolycopene

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

staphyloxanthin

iron(III) dicitrate

betanidin quinone

betanidin

D-alanyl-D-alanine

D-gluconate

D-mannonate

L-idonate

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

ADP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-N-acetyl-β-neuraminate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

4-deoxy-L-threo-hex-4-enopyranuronate

β-D-fructofuranose

keto-D-fructose

keto-L-rhamnulose

D-xylulose

N-acetyl-α-D-mannosamine

N-acetyl-β-neuraminate

glycerol

D-mannitol 1-phosphate

carbamate

L-citrulline

L-aspartate

L-threonine

L-glutamate

L-glutamine

L-tyrosine

L-phenylalanine

glycine

L-serine

L-isoleucine

L-lysine

L-proline

L-tryptophan

L-alanine

L-leucine

L-histidine

L-valine

L-arginine

L-cysteine

L-methionine

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-ornithine

L-aspartate 4-semialdehyde

L-homocysteine

L-homoserine

L-canaline

meso-diaminopimelate

L-aspartyl-4-phosphate

L-selenomethionine

seleno-L-homocysteine

trans-4-hydroxy-L-proline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

L-cystathionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

D-glutamate

D-alanine

D-aspartate

β-alanine

acetate

orotate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

butanoate

palmitate

(R)-lactate

(R)-glycerate

2-oxoglutarate

2-oxobutanoate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

D-threo-isocitrate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

butan-1-ol

ethanol

methanol

adenine

guanine

XMP

AMP

IMP

GMP

ITP

ATP

GTP

ADP

GDP

IDP

dGDP

dIDP

dADP

dITP

dGTP

dATP

dAMP

dGMP

hypoxanthine

inosine

adenosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

5,10-methylene-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FMNH₂

reduced riboflavin

FADH₂

FMN

riboflavin

FAD

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

preQ₁

isoguanine

UDP

dUTP

dUDP

CTP

CDP

dCTP

dCDP

UTP

dTTP

dTDP

cytidine-3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 3'-monophosphate

uridine 2'3'-cyclic monophosphate

dTMP

dUMP

dCMP

dipicolinate

UMP

CMP

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

thymidine

adenosylcobalamin

sirohydrochlorin

cobyrinate

precorrin-2

precorrin-1

coenzyme A

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

8-oxo-GTP

8-oxo-dGTP

5'-deoxyadenosine

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

cyclic-AMP

ppGpp

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

glycine betaine

(S)-NADHX

(R)-NADHX

thiamine

cob(I)alamin

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

malonyl-CoA

acetyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

isobutanoyl-CoA

oleoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

18-hydroxyoleoyl-CoA

propanoyl-CoA

butanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

crotonyl-CoA

trans-dienelactone

cis-dienelactone

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

thiocyanate

S-sulfanylglutathione

agmatine

spermidine

putrescine

cadaverine

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

superoxide

hydroxyl radical

hydrogensulfite

hydrogencarbonate

sulfite

thiosulfate

selenide

OH^-

nitrate

sulfate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

Mo²⁺

H⁺

K⁺

Na⁺

ammonium

2-chloroacetate

hydrogen cyanide

preQ₀

(R)-citramalate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

oxygen

hydrogen sulfide

uroporphyrinogen-III

protoporphyrinogen IX

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

siroheme

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

ethylphosphate

DNA with lesion