an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-maleylacetate

phosphocholine

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

lipid A disaccharide (E. coli)

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(R)-pantothenate

butyramide

D-erythro-imidazole-glycerol-phosphate

2-phosphoglycolate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

(R)-4'-phosphopantothenate

N²-succinyl-L-glutamate 5-semialdehyde

hydroxylamine

ammonia

L-selenocystathionine

histidinal

dethiobiotin

8-amino-7-oxononanoate

pimeloyl-CoA

7,8-diaminopelargonate

(R)-4'-phosphopantothenoyl-L-cysteine

hydrogen selenide

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

pyruvic oxime

autoinducer 2

homogentisate

4-maleyl-acetoacetate

2-amino-3-carboxymuconate-6-semialdehyde

(R)-mevalonate

2-hydroxy-5-carboxymethylmuconate semialdehyde

(4S)-4-hydroxy-2-oxoheptanedioate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

N-ethylammelide

glutathioselenol

selenodiglutathione

2-keto-L-gulonate

4-(γ-L-glutamylamino)butanal

D-glycero-β-D-manno-heptose 1,7-bisphosphate

oxamate

maleamate

L-dehydro-ascorbate

dehydroascorbate (bicyclic form)

3-keto-L-gulonate 6-phosphate

5-aminopentanoate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

cyclic-2,3-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

2-carboxy-L-xylonolactone

1-piperideine-2-carboxylate

2-carboxy-L-threo-pentonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

bisorganyltrisulfane

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

4-guanidinobutanoate

4-guanidinobutyramide

H₂O

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

5-dehydro-4-deoxy-D-glucarate

2,3-dioxo-L-gulonate

3-keto-L-gulonate

CO₂

coproporphyrinogen III

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

S-formylglutathione

3-mercaptopyruvate

hydroxypyruvate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

phosphoenolpyruvate

prephenate

glycerone phosphate

xanthine

citrate

S-ribosyl-L-homocysteine

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

carbamoyl phosphate

α-D-glucosamine 1-phosphate

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

oxaloacetate

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

2-dehydro-3-deoxy-D-gluconate

6-phospho D-glucono-1,5-lactone

3-ureidopropanoate

5-methylcytosine

3-deoxy-D-manno-octulosonate 8-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

oxalosuccinate

D-gluconate 6-phosphate

glycolate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

S-adenosyl 3-(methylsulfanyl)propylamine

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-α-D-ribose

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

acetyl phosphate

shikimate

2-dehydropantoate

carboxyphosphate

L-histidinol phosphate

imidazole acetol-phosphate

anthranilate

N-(5-phosphoribosyl)-anthranilate

3-deoxy-α-D-manno-2-octulosonate

hydrogen peroxide

3-dehydroshikimate

hydrogenobyrinate

5-dehydro-D-gluconate

4-amino-4-deoxychorismate

L-canavanine

N-formylmaleamate

2,5-dihydroxypyridine

6-hydroxynicotinate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(lipoyl)adenylate

quinolinate

N-carbamoyl-2-oxoglycine

(S)-ureidoglycolate

tartronate semialdehyde

6-amino-2-oxohexanoate

2-aminoacetaldehyde

carbon monoxide

2-protocatechuoylphloroglucinolcarboxylate

urea

2,5-dioxopentanoate

histidinol

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

4-hydroxy-2-nonenal

D-glycero-β-D-manno-heptose 1-phosphate

lipid IV_A

(S)-dihydroorotate

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

3-dehydroquinate

3-phosphooxypyruvate

(4-hydroxyphenyl)acetate

isopentenyl diphosphate

γ-glutamyl-L-putrescine

4-(γ-L-glutamylamino)butanoate

(2R,3S)-3-methylmalate

citraconate

DNA without lesion

carbonic acid

glutathione disulfide

(2S)-4-acetamido-2-aminobutanoate

ectoine

orotidine 5'-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-6-(D-ribitylamino)uracil

N²-succinylglutamate

lipid X

7-carboxy-7-deazaguanine

selenophosphate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

acetoacetate

4-fumaryl-acetoacetate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-galactonate

N,N-dimethylaniline-N-oxide

N,N-dimethylaniline

ethanolamine

O-acetyl-L-serine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

prenyl diphosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

urea-1-carboxylate

4'-phosphopantetheine

formamide

2-oxoadipate

N-ethylammeline

deethylsimazine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

2-iminoacetate

dihydroxyacetone

preuroporphyrinogen

porphobilinogen

2-hydroxy-3-oxosuccinate

meso-tartrate

L-tartrate

N⁵-carboxyaminoimidazole ribonucleotide

5-carboxymethyl-2-hydroxymuconate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

2'-hydroxypseudobaptigenin

(3R)-sophorol

2-hydroxyformononetin

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

S-methyl-5'-thioadenosine

thiamine diphosphate

(S)-5-amino-3-oxohexanoate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

4-methyl-3-oxoadipate

L-gulono-1,4-lactone

ε-caprolactone

cyclohexanone

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

cis,cis-muconate

muconolactone

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

(+)-muconolactone

(indol-3-yl)pyruvate

hydrogenobyrinate a,c-diamide

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

L-α-amino-ε-keto-pimelate

carbamate

L-2-aminoadipate

L-citrulline

L-histidine

L-cysteine

L-methionine

L-glutamate

L-aspartate

L-threonine

glycine

L-alanine

L-glutamine

L-phenylalanine

L-lysine

L-tryptophan

L-serine

L-proline

L-arginine

L-tyrosine

L-leucine

L-asparagine

L-valine

L-isoleucine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

1-aminocyclopropane-1-carboxylate

O-phospho-L-homoserine

L-homoserine

L-glutamate-5-semialdehyde

L-canaline

3-sulfino-L-alanine

hypoglycin A

L-homocysteine

O-succinyl-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

seleno-L-homocysteine

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

cis-4-hydroxy-D-proline

N-carbamoylglycine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

D-glutamate

D-alanine

D-lysine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

benzoate

acetate

(R)-pantoate

D-mannonate

D-gluconate

allantoate

orotate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

pristanate

7-hydroxylaurate

laurate

octanoate

decanoate

stearate

palmitate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

phytenate

oleate

(15Z)-tetracosenoate

linoleate

α-linolenate

(2R,3S)-2-methylisocitrate

(R)-lactate

(S)-lactate

(R)-glycerate

(R)-3-hydroxybutanoate

pyruvate

formate

propanoate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

2-oxoglutarate

2-oxobutanoate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

4-(methylsulfanyl)-2-oxobutanoate

(R)-4-hydroxy-4-methyl-2-oxoglutarate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

3-oxoadipate

cis-aconitate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

D-glucarate

α,ω-9Z-octadecenedioate

maleate

fumarate

succinate

(S)-malate

nicotinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

acetamide

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

4-O-phospho-α-Kdo8N-(2→6)-lipid IV_A

α-Kdo8N-(2→6)-lipid IV_A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

L-idonate

D-galactonate

L-gulonate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

α,α-trehalose 6-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a peptidoglycan dimer (E. faecium, tetrapeptide)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

β-L-rhamnopyranose

α-L-rhamnopyranose

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

α-D-ribofuranose

glycolaldehyde

keto-D-fructose

D-xylulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

D-mannitol

α,α-trehalose

maltotetraose

maltohexaose

maltoheptaose

maltotriose

maltopentaose

glycine betaine

FMN

FMNH₂

FAD

FADH₂

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

caldariellaquinone

NADP⁺

NAD⁺

NADPH

NADH

(S)-NADHX

(R)-NADHX

3,5-cyclohexadiene-1,2-diol-1-carboxylate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

catechol

3,4-dihydroxyphenylacetate

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 4-monophosphate

ethanol

methanol

3-(N-morpholino)propanal

methylglyoxal

benzaldehyde

acetaldehyde

butan-1-al

formaldehyde

(R)-acetoin

(S)-acetoin

menadione

diacetyl

nicotinate

L-ascorbate

thiamine

riboflavin

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

urate

4-hydroxybenzoate

benzene

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

quercetin

4-methylphenol

phenylacetonitrile

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

7,8-dihydrolumazine

6-carboxy-5,6,7,8-tetrahydropterin

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

molybdopterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropterin

7,8-dihydropteroate

MoO₂-molybdopterin cofactor

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

(3R)-vestitone

adenine

guanine

xanthosine

inosine

adenosine

guanosine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dADP

dIDP

dGTP

dATP

dITP

dAMP

dGMP

hypoxanthine

uracil

thymine

cytosine

preQ₁

isoguanine

UDP

dUTP

dCTP

UTP

CTP

5,6-dihydrouracil

5,6-dihydrothymine

CDP

dCDP

dUDP

dTTP

dTDP

dUMP

dCMP

dTMP

UMP

CMP

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

5-fluorouracil

hydantoin

cob(I)alamin

adenosylcobalamin

cobyrinate

precorrin-7

precorrin-6B

cobalt-precorrin-6A

cobalt-precorrin-6B

precorrin-4

precorrin-3B

precorrin-3A

precorrin-2

precorrin-8x

precorrin-6A

precorrin-5

ethene

(indol-3-yl)acetate

(+)-7-epi-jasmonate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

acetyl-CoA

2-methylacetoacetyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

malonyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

succinyl-CoA

4-hydroxybenzoyl-CoA

3'-dephospho-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-aminobutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

16-hydroxypalmitoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

pristanoyl-CoA

7-hydroxylauroyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

propanoyl-CoA

butanoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

crotonyl-CoA

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

D-galactono-1,4-lactone

coenzyme A

(R)-lipoate

8-oxo-GTP

8-oxo-dGTP

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

adenylo-succinate

5'-deoxyadenosine

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic di-3',5'-guanylate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

taurine

sulfoacetaldehyde

isethionate

1-butanesulfonate

3-(N-morpholino)propanesulfonate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

thiocyanate

S-sulfanylglutathione

choline sulfate

choline

betaine aldehyde

betaine aldehyde hydrate

agmatine

putrescine

spermidine

N-acetylputrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

hydroxyl radical

monodehydroascorbate radical

superoxide

molybdate

selenide

selenite

OH^-

hydrogensulfite

sulfate

nitrate

sulfite

hydrogencarbonate

nitrite

thiosulfate

selenate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Mn²⁺

Zn²⁺

Mo²⁺

Fe²⁺

ammonium

H⁺

2-chloroacetate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

propionitrile

3-cyanopyridine

hydrogen cyanide

preQ₀

(indole-3-yl)acetonitrile

acrylonitrile

n-butyronitrile

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

protoporphyrinogen IX

protoheme

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobyrate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosyl-cobinamide phosphate

ethylphosphate

(Z)-phenylacetaldehyde oxime

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal