an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

N-succinyl-2-amino-6-ketopimelate

H₂O

(S)-2,3,4,5-tetrahydrodipicolinate

phosphoenolpyruvate

carboxyphosphate

carbamoyl phosphate

α-D-glucosamine 1-phosphate

glycerone phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

hydrogen peroxide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

γ-L-glutamyl 5-phosphate

formate

CO₂

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

2-dehydropantoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(R)-1-amino-2-propanol O-2-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

isopentenyl diphosphate

N-succinyl-L,L-2,6-diaminopimelate

N-acetyl-L-glutamate 5-semialdehyde

S-methyl-5-thio-α-D-ribose 1-phosphate

S-methyl-5'-thioadenosine

5-deoxy-α-ribose 1-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

betaine aldehyde

1-deoxy-L-glycero-tetrulose 4-phosphate

quinolinate

β-nicotinate D-ribonucleotide

oxalosuccinate

citrate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

nicotinate adenine dinucleotide

(S)-dihydroorotate

oxaloacetate

3-deoxy-α-D-manno-2-octulosonate

3-deoxy-D-manno-octulosonate 8-phosphate

coproporphyrinogen III

porphobilinogen

6-phospho D-glucono-1,5-lactone

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

shikimate

N-acetylglutamyl-phosphate

orotidine 5'-phosphate

anthranilate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

N-(5-phosphoribosyl)-anthranilate

dethiobiotin

8-amino-7-oxononanoate

pimeloyl-CoA

7,8-diaminopelargonate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

7-carboxy-7-deazaguanine

glycolate

β-D-ribosylnicotinate

2-C-methyl-D-erythritol 4-phosphate

lipid A disaccharide (E. coli)

lipid X

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

DNA without lesion

(4-hydroxyphenyl)acetate

2-O-(α-D-glucopyranosyl)-sn-glycerol 3-phosphate

(2R,3S)-3-methylmalate

citraconate

N-carbamoylputrescine

acrylate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

O-acetyl-L-serine

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

3-oxopropanoate

(R)-pantothenate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-ketocyclohexane-1-carbonyl-CoA

2-hydroxy-cyclohexane-1-carbonyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

4'-phosphopantetheine

acetoacetate

3-phosphooxypyruvate

5-(methylsulfanyl)-ribulose 1-phosphate

N-ethylammeline

deethylsimazine

4-hydroxy-2-nonenal

12-α-hydroxy-3 oxochola-4,6-dienoate

7-α,12-α-dihydroxy-3-oxochol-4-enoate

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

ADP-D-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1-phosphate

pregn-5-ene-3,20-dione

pregn-5-ene-3,20-dione-17-ol

5-α-androstan-3β,17β-diol

5-androstene-3,17-dione

12α-hydroxy-3-oxocholan-24-oyl-CoA

deoxycholoyl-CoA

allopregnanolone

3-oxocholoyl-CoA

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

prephenate

3-dehydroshikimate

3-dehydroquinate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

5-amino-6-(D-ribitylamino)uracil

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-2-amino-6-oxohexanoate

S-formylglutathione

urea-1-carboxylate

urea

propanoyl phosphate

4-fumaryl-acetoacetate

2,6-dioxo-6-phenylhexa-3-enoate

cis,cis-muconate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

3-(2,3-dihydroxyphenyl)propanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

3-phenylpropanoate

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-hydroxypropanoate

S-adenosyl 3-(methylsulfanyl)propylamine

2-succinylbenzoate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

ε-caprolactone

cyclohexanone

2,3-dihydroxy-p-cumate

(2R,3S)-2,3-dihydroxy-2,3-dihydro-p-cumate

(1R,2S)-1,2-dihydronaphthalene-1,2-diol

N⁵-carboxyaminoimidazole ribonucleotide

lipid IV_A

(R)-4'-phosphopantothenoyl-L-cysteine

2-iminoacetate

2-maleylacetate

carbon monoxide

2-protocatechuoylphloroglucinolcarboxylate

methylsalicylate

salicyl alcohol

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

N,N-dimethylaniline-N-oxide

N,N-dimethylaniline

nicotine-1'-N-oxide

L-canavanine

preuroporphyrinogen

histidinol

histidinal

5-carboxymethyl-2-hydroxymuconate

L-histidinol phosphate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-oxoglutaramate

N-acetyl-D-muramate 6-phosphate

(R)-4'-phosphopantothenate

naphthalene-1,2-diol

trans-O-hydroxybenzylidenepyruvate

autoinducer 2

S-ribosyl-L-homocysteine

isochorismate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-(3-hydroxyphenyl)propanoate

muconolactone

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

homogentisate

4-maleyl-acetoacetate

glutathione disulfide

vanillin

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

N-ethylammelide

hydrogen selenide

glutathioselenol

selenodiglutathione

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

thiamine diphosphate

1-piperideine 6-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2E)-2-hydroxypenta-2,4-dienoate

4-oxalocrotonate

(3E)-2-oxopent-3-enoate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-cysteine

L-methionine

L-glutamate

L-glutamine

glycine

L-aspartate

L-leucine

L-isoleucine

L-valine

L-proline

L-serine

L-phenylalanine

L-alanine

L-threonine

L-arginine

L-tyrosine

L-lysine

L-tryptophan

L-histidine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

L-homocysteine

L-ornithine

O-phospho-L-homoserine

3-sulfino-L-alanine

O-succinyl-L-homoserine

L-canaline

hypoglycin A

L-glutamate-5-semialdehyde

meso-diaminopimelate

L-aspartyl-4-phosphate

L-saccharopine

2-hydroxy-5-oxoproline

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

L-threonine 3-O-phosphate

3-phospho-L-serine

L,L-diaminopimelate

D-alanine

D-glutamate

β-alanine

(S)-3-amino-2-methylpropanoate

protocatechuate

vanillate

trans-cinnamate

salicylate

4-aminobenzoate

benzoate

acetate

(R)-pantoate

orotate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

pristanate

palmitate

stearate

octanoate

laurate

7-hydroxylaurate

decanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

(15Z)-tetracosenoate

oleate

phytenate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

linoleate

α-linolenate

(2R,3S)-2-methylisocitrate

(R)-lactate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

cis-aconitate

(2S,3S)-2-methylcitrate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

chorismate

(3E)-2-oxohex-3-enedioate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

salicylaldehyde

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

all-trans-retinyl palmitate

all-trans-retinol

3-oxo-24-ethyl-cholest-4-ene

3-oxo-24-ethyl-cholest-5-ene

trans,octacis-decaprenyl phosphate

(S)-nicotine

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-3-dehydro-6-deoxy-α-D-galactopyranose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-ribose-1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

D-glyceraldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

N-acetyl-β-D-glucosamine

glycerol

3,5-cyclohexadiene-1,2-diol-1-carboxylate

hydroquinone

3-methylcatechol

4-methylcatechol

3-sulfocatechol

catechol

biphenyl-2,3-diol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 4-monophosphate

1-octanol

ethanol

methanol

methylglyoxal

acetaldehyde

1-propanal

1-octanal

caldariellaquinone

diacetyl

4-hydroxyacetophenone

biphenyl

4-hydroxybenzoate

benzene

naphthalene

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

quercetin

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

phenol

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2-hydroxychromene-2-carboxylate

guanine

adenine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dIDP

dADP

dGTP

dITP

dATP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyguanosine

tetrahydromethanopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6-carboxy-5,6,7,8-tetrahydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

cyclic pyranopterin phosphate

molybdopterin

molybdopterin adenine dinucleotide

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

MoO₂-molybdopterin cofactor

FADH₂

FMNH₂

FAD

FMN

riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

preQ₁

isoguanine

UTP

CTP

dUTP

dCTP

dUDP

CDP

dCDP

UDP

dTTP

dTDP

dUMP

dCMP

dTMP

cytidine-3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 3'-monophosphate

uridine 2'3'-cyclic monophosphate

CMP

UMP

cytidine

uridine

adenosylcobalamin

cobyrinate

sirohydrochlorin

precorrin-2

precorrin-1

coenzyme A

5'-deoxyadenosine

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

pppGpp

ppGpp

8-oxo-GTP

8-oxo-dGTP

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

NAD⁺

NADP⁺

NADPH

NADH

glycine betaine

(S)-NADHX

(R)-NADHX

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

cob(I)alamin

androsterone

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

campesterol

campest-4-en-3-one

17-β-hydroxy-5-α-androstan-3-one

testosterone

progesterone

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

cholest-4-en-3-one

3-oxo-23,24-bisnorchol-1,4-dien-22-yl-CoA

cholest-dien-3-one

5-α-pregnane-3,20-dione

campest-4-en-3β-ol

7α-hydroxy-5β-cholestan-3-one

7α,12α-dihydroxy-5β-cholestan-3-one

5α-androstane-3,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5β-cholestane-3α,7α,12α-triol

17-α-hydroxyprogesterone

cholest-5-en-3-one

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

3-dehydrocholate

cholate

deoxycholate

succinyl-CoA

malonyl-CoA

acetyl-CoA

2-methylacetoacetyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

3-methylglutaconyl-CoA

choloyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

3-oxoadipyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-palmitoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

16-hydroxypalmitoyl-CoA

hexadecanedioyl-CoA

palmitoyl-CoA

stearoyl-CoA

myristoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

propanoyl-CoA

butanoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxytetradecanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

methanethiol

agmatine

cadaverine

spermidine

putrescine

(2Z)-2-aminobut-2-enoate

superoxide

hydroxyl radical

sulfate

nitrate

hydrogencarbonate

sulfite

selenate

OH^-

selenite

molybdate

hydrogensulfite

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

ammonium

K⁺

H⁺

2-chloroacetate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

preQ₀

acrylonitrile

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(R)-citramalate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

2-iminobutanoate

oxygen

hydrogen sulfide

protoporphyrinogen IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

siroheme

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobyrate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal