an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

pyruvic oxime

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

enol-phenylpyruvate

formamide

prephenate

quinolinate

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

D-gluconate 6-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

preuroporphyrinogen

porphobilinogen

hydrogenobyrinate a,c-diamide

3-dehydroquinate

3-dehydroshikimate

O-acetyl-L-serine

5-amino-6-(D-ribitylamino)uracil

(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate

N5-(L-1-carboxyethyl)-L-ornithine

(R)-4'-phosphopantothenoyl-L-cysteine

DNA without lesion

3-oxopropanoate

H₂

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

α-D-glucosamine 1-phosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

orotidine 5'-phosphate

(S)-dihydroorotate

β-D-ribosylnicotinate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

1-deoxy-L-glycero-tetrulose 4-phosphate

acetoacetate

2-succinylbenzoate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

butanoyl phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

N²-acetyl-α-aminoadipate

urea-1-carboxylate

3-deoxy-D-manno-octulosonate 8-phosphate

carboxyphosphate

3-deoxy-α-D-manno-2-octulosonate

L-selenocystathionine

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

citrate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

nicotinate adenine dinucleotide

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

glycolate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

L-histidinol phosphate

ethanolamine

3-phosphooxypyruvate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

ammonia

hydroxylamine

hydroxypyruvate

(S)-2-amino-6-oxohexanoate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

mesaconate

hydrogen peroxide

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

coproporphyrinogen III

selenophosphate

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

3-phosphonopyruvate

(S)-mandelate

(R)-mandelate

L-canavanine

urea

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

hydrogenobyrinate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

5-dehydro-D-gluconate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

phosphoenolpyruvate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

4'-phosphopantetheine

xanthine

carbamoyl phosphate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

5-phospho-β-D-ribosylamine

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

oxalosuccinate

oxaloacetate

glycerone phosphate

acetyl phosphate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

3-methyl-2-oxobutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

4-imidazolone-5-propanoate

urocanate

histidinal

histidinol

H₂O

DNA with lesion

L-homocysteine

phenylacetate

N₂

adenosylcobalamin

cob(I)alamin

cobalt-factor III

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-5B

cobalt-sirohydrochlorin

cobalt-precorrin-2

cobalt-precorrin-3

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-6B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

protoheme

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

(2E,6E)-farnesyl diphosphate

H⁺

ammonium

Fe²⁺

Co²⁺

molybdate

selenide

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

glutathione

methanethiol

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

2,3-dihydroxybenzoate

protocatechuate

trans-cinnamate

preQ₀

molybdopterin

coenzyme A

thio-molybdenum cofactor

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

adenylyl molybdenum cofactor

bis(molybdenum cofactor)

bis(guanylyl molybdopterin) cofactor

riboflavin

nicotinate

(S)-3-hydroxy-3-methylglutaryl-CoA

CoA-disulfide

4-hydroxybutanoyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

(R)-2-hydroxyglutaryl-CoA

phenylacetyl-CoA

(E)-glutaconyl-CoA

succinyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

malonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

butanoyl-CoA

pentanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

(3E)-2-oxohex-3-enedioate

succinate

L-aspartate

fumarate

(S)-malate

3-carboxy-cis,cis-muconate

(2R)-homocitrate

(1R,2S)-homoisocitrate

cis-homoaconitate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

propanoate

(R)-lactate

butanoate

pentanoate

4-hydroxybutanoate

palmitate

orotate

D-gluconate

(S)-1-pyrroline-5-carboxylate

L-2-aminoadipate

carbamate

L-serine

L-leucine

L-alanine

glycine

L-proline

L-glutamine

D-glutamate

L-glutamate

L-norvaline

L-lysine

L-arginine

L-histidine

L-phenylalanine

L-tyrosine

L-tryptophan

D-alanine

D-proline

seleno-L-homocysteine

L-aspartyl-4-phosphate

L-saccharopine

D-nopaline

3-phospho-L-serine

(2S, 3S)-3-methylaspartate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

O-acetyl-L-homoserine

L-isoglutamine

L-valine

L-cystathionine

L,L-diaminopimelate

L-ornithine

L-isoleucine

L-threonine

L-methionine

L-cysteine

L-citrulline

hypoglycin A

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-homoserine

L-aspartate 4-semialdehyde

L-canaline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

2-oxobutanoate

hypoglycin B

1-oleoyl-2-palmitoyl-phosphatidylglycerol

butan-1-ol

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

sucrose 6^G-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucuronate

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-6-deoxy-α-D-glucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

L-idonate

diacetyl

methylglyoxal

butan-1-al

acetaldehyde

precorrin-2

precorrin-1

precorrin-8x

precorrin-3B

precorrin-4

sirohydrochlorin

dUDP

dTDP

dTMP

CDP

dCMP

dCDP

dUMP

dTTP

dCTP

CTP

dUTP

UTP

uracil

UDP

CMP

UMP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

hypoxanthine

adenine

guanine

preQ₁

xanthosine

adenosine

inosine

guanosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

GTP

ATP

GDP

ADP

IMP

XMP

GMP

AMP

dGTP

dATP

dADP

dGDP

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

5'-deoxyadenosine

adenylo-succinate

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

β-nicotinamide D-ribonucleotide