an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

4-oxalocrotonate

(2E)-2-hydroxypenta-2,4-dienoate

5,6-dihydroxyindole

ammonia

enol-phenylpyruvate

S-(hydroxymethyl)mycothiol

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

4-oxoglutaramate

selenodiglutathione

glutathioselenol

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

isopropylamine

formamide

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3-maleylpyruvate

(salicyl)adenylate

5-aminopentanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(S)-4-hydroxy-2-oxohexanoate

S-ribosyl-L-homocysteine

autoinducer 2

muconolactone

2-dehydro-3-deoxy-D-galactonate 6-phosphate

shikimate

L-dopachrome

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

H₂

2,6-dioxo-6-phenylhexa-3-enoate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

cis-3,4-dehydroadipyl-CoA

trans-2,3-dehydroadipyl-coA

3-(2,3-dihydroxyphenyl)propanoate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

(R)-3-(phenyl)lactoyl-CoA

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

methylamine

N-ethylglycine

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

glutathionylspermidine

prephenate

4-maleyl-acetoacetate

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

5-carboxymethyl-2-hydroxymuconate

2,3-epoxy-2,3-dihydrobenzoyl-CoA

cis-3,4-dehydroadipyl-CoA semialdehyde

2-methyl-4-chlorophenol

nicotinate adenine dinucleotide

coenzyme F₃₉₀-A

3-phosphonopyruvate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

2-dehydropantoate

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

diethylthiophosphate

diethylphosphate

dimethylthiophosphate

4-hydroxy-2-nonenal

β-D-ribosylnicotinate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoate

porphobilinogen

1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate

4-fumaryl-acetoacetate

urea-1-carboxylate

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

L-gulono-1,4-lactone

(S)-2,3,4,5-tetrahydrodipicolinate

(R)-4'-phosphopantothenoyl-L-cysteine

6-phospho D-glucono-1,5-lactone

2-dehydro-3-deoxy-D-galactonate

3-mercaptopyruvate

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

cis,cis-muconate

2-dehydro-3-deoxy-D-gluconate

2,3,5,6-tetracholorophenol

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

L-β-lysine

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

creatinine

N-Formyl-L-kynurenine

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

orotidine 5'-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-phospho-β-D-ribosylamine

D-gluconate 6-phosphate

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(lipoyl)adenylate

(S)-2-amino-6-oxohexanoate

acetyl phosphate

2-aminoacetaldehyde

2-aminomalonate semialdehyde

nicotine-1'-N-oxide

N,N-dimethylaniline

N,N-dimethylaniline-N-oxide

2-C-methyl-D-erythritol 4-phosphate

(S)-ureidoglycolate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

N-acetyl-D-muramate 6-phosphate

4'-phosphopantetheine

L-canavanine

thiamine phosphate

thiamine diphosphate

citraconate

(2R,3S)-3-methylmalate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

coniferaldehyde

4-coumaraldehyde

selenophosphate

quercitrin

homogentisate

(2-hydroxyphenyl)acetate

3-hydroxyanthranilate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

carbonic acid

D-erythro-imidazole-glycerol-phosphate

7,8-diaminopelargonate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

pimeloyl-CoA

8-amino-7-oxononanoate

mycothione

ethanolamine

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

carbon monoxide

3-hydroxypropanoate

isoquinoline

isoquinolin-2(1H)-one

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

(S)-mandelate

(R)-mandelate

3-ureidopropanoate

γ-L-glutamyl 5-phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

2-maleylacetate

salicyl alcohol

methylsalicylate

digallate

gallate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-6-(D-ribitylamino)uracil

glycolate

xanthine

5-oxo-L-proline

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

hydroxyatrazine

N-isopropylammelide

ethylamine

5-methylcytosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7-α,12-α-dihydroxy-3-oxochol-4-enoate

12-α-hydroxy-3 oxochola-4,6-dienoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

DNA without lesion

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

secologanin

tryptamine

3-α(S)-strictosidine

butyramide

coproporphyrinogen III

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(2S)-4-acetamido-2-aminobutanoate

ectoine

(4-hydroxyphenyl)acetate

4-methyl-3-oxoadipate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

3-oxocholoyl-CoA

allopregnanolone

deoxycholoyl-CoA

12α-hydroxy-3-oxocholan-24-oyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

hydroxypyruvate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

3-deoxy-D-glycero-2,5-hexodiulosonate

isopentenyl diphosphate

(E)-3-(methoxycarbonyl)pent-2-enedioate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

oxalate

tartronate semialdehyde

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

(R)-pantothenate

(R)-4'-phosphopantothenate

acetoacetate

preuroporphyrinogen

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

3-dehydroquinate

3-dehydroshikimate

(S)-dihydroorotate

carbamoyl phosphate

carboxyphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

4-amino-4-deoxychorismate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-methyl-2-oxopentanoate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

glycerone phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

phosphoenolpyruvate

anthranilate

N-(5-phosphoribosyl)-anthranilate

imidazole acetol-phosphate

L-histidinol phosphate

β-nicotinate D-ribonucleotide

quinolinate

hydrogen peroxide

dethiobiotin

glutathione disulfide

α-D-glucosamine 1-phosphate

urea

citrate

3-oxopropanoate

4-aminobutanoate

hydrogen selenide

O-acetyl-L-serine

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

aminoacetone

oxaloacetate

oxalosuccinate

urocanate

4-imidazolone-5-propanoate

succinate semialdehyde

CO₂

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

histidinal

histidinol

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

adenosylcobyrate

chlorophyll a

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

cobalt-precorrin-6B

cobalt-precorrin-6A

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobinamide

adenosyl-cobinamide phosphate

chlorophyllide a

protochlorophyllide a

3,8-divinyl chlorophyllide a

3,8-divinyl protochlorophyllide a

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

protoheme

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

pheophorbide a

pheophorbide b

pheophytin a

pheophytin b

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2-O-(α-D-glucopyranosyl)-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(R)-3-(phenyl)lactate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

3-cyanopyridine

(indole-3-yl)acetonitrile

propionitrile

acrylonitrile

n-butyronitrile

parathion

paraoxon

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-chloromaleylacetate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

2,4-dichlorophenol

3,5-dichlorocatechol

5-chloro-3-methylcatechol

pentachlorophenol

Fe³⁺

ammonium

H⁺

Mg²⁺

Fe²⁺

Co²⁺

sulfate

hydrogensulfite

selenite

OH^-

selenide

molybdate

superoxide

sulfite

hydrogencarbonate

thiosulfate

selenate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycine betaine

betaine aldehyde

choline

betaine aldehyde hydrate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

S-(hydroxymethyl)glutathione

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

deacetylmycothiol

thiocyanate

mycothiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

3-(N-morpholino)propanesulfonate

1-butanesulfonate

isethionate

3-sulfocatechol

3-sulfino-L-alanine

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

all-trans-retinyl palmitate

oleandomycin

glucosyl-oleandomycin

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

isovaleryl-CoA

2-methylbutanoyl-CoA

6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(5Z)-tetradecenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

anthraniloyl-CoA

5-aminolevulinyl-CoA

(S)-3-aminobutanoyl-CoA

benzoyl-CoA

trans-feruloyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

salicyl-CoA

gentisyl-CoA

isobutanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

phenylacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

malonyl-CoA

choloyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

formyl-CoA

oxalyl-CoA

succinyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(E)-cinnamoyl-CoA

phytanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

tributyrin

1,2-dibutyrin

3,22-dioxochol-4-en-24-oyl-CoA

cholest-4-en-3-one

cholest-dien-3-one

3-oxo-4-pregnene-20-carboxyl-CoA

3-oxo-23,24-bisnorchol-1,4-dien-22-yl-CoA

5-α-pregnane-3,20-dione

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

deoxycholate

cholate

3-dehydrocholate

androsterone

5β-cholestane-3α,7α,12α-triol

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

cholesterol

cholest-5-en-3-one

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

7α,12α-dihydroxy-5β-cholestan-3-one

7α-hydroxy-5β-cholestan-3-one

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

campest-4-en-3-one

5α-androstane-3,17-dione

testosterone

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

thiamine

riboflavin

nicotinate

nicotinamide

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

menadione

FAD

FADH₂

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

isoguanine

8-oxo-GTP

8-oxo-GMP

pppGpp

ppGpp

dIDP

dITP

8-oxo-dGTP

8-oxo-dGMP

dGMP

dAMP

cyclic-AMP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

XMP

GMP

ITP

IDP

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

dATP

dGTP

GTP

5'-deoxyadenosine

AMP

dADP

dGDP

GDP

IMP

ATP

ADP

5-fluorocytosine

5-fluorouracil

xanthosine

guanosine

inosine

adenosine

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dUDP

dCDP

dTDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

GDP-α-D-glucose

ADP-α-D-glucose

cytosine

uracil

thymine

guanine

adenine

5,6-dihydrouracil

5,6-dihydrothymine

UDP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

(R)-lipoate

coenzyme A

oxidized coenzyme F₄₂₀-2

oxidized coenzyme F₄₂₀-0

MoO₂-molybdopterin cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-3B

precorrin-3A

precorrin-2

precorrin-1

precorrin-4

precorrin-6B

precorrin-7

precorrin-5

precorrin-6A

precorrin-8x

hydantoin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

molybdopterin adenine dinucleotide

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

hesperidin

naringin

prunin

hesperitin-7-O-β-D-glucoside

quercetin

quercetin-3-glucoside

rutin

cyanuric acid

3-hexaprenyl-4-hydroxybenzoate

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

biphenyl

4-hydroxyacetophenone

4-hydroxybenzoate

atrazine

amino-parathion

methyl parathion

phenylacetaldehyde

benzaldehyde

cinnamaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-aminophenol

hydroquinone

4-methylcatechol

3-methylcatechol

2,3-dihydroxybenzoate

biphenyl-2,3-diol

L-dopa

catechol

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

protocatechuate

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

2,6-dichlorohydroquinone

2,3,6-trichlorohydroquinone

2,3,5,6-tetrachlorohydroquinone

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

trans-cinnamate

salicylate

4-aminobenzoate

benzoate

diacetyl

acetone

2,5-piperidinedione

dopaquinone

methylglyoxal

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

1-propanal

butan-1-al

acetaldehyde

formaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-ribofuranose

α-L-rhamnopyranose

β-L-rhamnopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-ol

ethanol

methanol

phytol

1-octanol

sphingosine

sphingosine 1-phosphate

glycerol

(3R)-linalool

myo-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

phytate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

cellotetraose

β-D-cellobiose

raffinose

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

sucrose

α,α-trehalose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

keto-L-rhamnulose

4-deoxy-L-threo-hex-4-enopyranuronate

4-deoxy-L-erythro-hex-4-enopyranuronate

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

L-gulonate

D-gluconate

D-galactonate

D-mannonate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

(-)-geosmin

(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol

(8S,9S,10S)-8,10-dimethyl-1-octalin

geranyl diphosphate

(-)-cuparene

(+)-thujopsene

α-zingiberene

(S)-β-bisabolene

α-copaene

(E)-β-farnesene

(-)-β-elemene

(+)-α-barbatene

(-)-α-cuprenene

(-)-β-caryophyllene

β-acoradiene

isobazzanene

β-sesquiphellandrene

α-chamigrene

α-humulene

(+)-β-chamigrene

(+)-β-barbatene

trans,octacis-decaprenyl phosphate

δ-cuprenene

1-hydroxyneurosporene

methoxyneurosporene

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

leucodopachrome

(S)-nicotine

vancomycin aglycone

devancosaminyl-vancomycin

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2R,3S)-2-methylisocitrate

3-carboxy-cis,cis-muconate

trans-aconitate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

butanoate

7-hydroxylaurate

laurate

octanoate

decanoate

gentisate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

leukotriene-D4

leukotriene-E4

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

5-deoxy-D-glucuronate

(R)-pantoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-kynurenine

carbamate

L-serine

L-cysteine

L-tyrosine

L-asparagine

L-glutamine

glycine

L-threonine

L-arginine

L-lysine

L-histidine

L-glutamate

L-methionine

L-proline

L-alanine

L-phenylalanine

L-leucine

L-valine

L-tryptophan

L-isoleucine

L-selenocysteine

creatine

(R)-β-lysine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

D-glutamate

D-ornithine

D-proline

D-alanine

L-isoglutamine

L-aspartyl-4-phosphate

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-ornithine

L-cystathionine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formyl-L-methionine

N-formimino-L-glutamate

N-acetyl-L-ornithine

L-saccharopine

S-sulfanyl-L-cysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

S-methyl-L-cysteine

sarcosine

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N⁶-hydroxy-L-lysine

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

hypoglycin A

L-canaline

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

1-aminocyclopropane-1-carboxylate

L-cystine

L-homoserine

S-adenosyl-L-methionine

S-sulfo-L-cysteine

O-phospho-L-homoserine

meso-diaminopimelate

L-allo-threonine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

D-alanyl-D-lactate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine