an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

shikimate

shikimate 3-phosphate

urea

β-D-ribosylnicotinate

4-amino-4-deoxychorismate

carbonic acid

(S)-2,3,4,5-tetrahydrodipicolinate

2-dehydropantoate

2-C-methyl-D-erythritol 4-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-aminobutanoate

α-D-glucosamine 1-phosphate

histidinal

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

3-phosphooxypyruvate

carboxyphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

thiamine diphosphate

hydrogen peroxide

quinolinate

citrate

prenyl diphosphate

anthranilate

(S)-dihydroorotate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

glycerone phosphate

(S)-3-methyl-2-oxopentanoate

coenzyme F₃₉₀-A

D-erythro-imidazole-glycerol-phosphate

3-dehydroshikimate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

β-D-fructose 2,6-bisphosphate

xanthine

L-selenocystathionine

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

hexulose 6-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

acetyl phosphate

prephenate

orotidine 5'-phosphate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

methylsalicylate

salicyl alcohol

oligosaccharide with β-D-xylopyranosyl-(1->4)-β-D-xylopyranosyl-(1->4)-β-D-xylopyranose at the reducing end

oligosaccharide with β-D-xylopyranosyl-(1->4)-α-D-xylopyranose at the reducing end

DNA without lesion

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

phosphoenolpyruvate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

glycolate

L-canavanine

L-arginino-succinate

canavaninosuccinate

carbamoyl phosphate

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

S-ribosyl-L-homocysteine

autoinducer 2

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

oxaloacetate

2-iminoacetate

ethanolamine

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

(R)-pantothenate

(R)-4'-phosphopantothenate

N-(5-phosphoribosyl)-anthranilate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

oxalosuccinate

H₂O

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

oxygen

hydrogen sulfide

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

caldariellaquinol

caldariellaquinone

NADH

NADPH

NAD⁺

NADP⁺

ammonium

H⁺

hydrogencarbonate

phosphate

diphosphate

chloride

glutathione

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

protocatechuate

salicylate

4-aminobenzoate

coenzyme A

oxidized coenzyme F₄₂₀-2

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

nicotinamide

riboflavin

nicotinate

pyridoxine

pyridoxine 5'-phosphate

pyridoxal

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

all-trans-retinol

all-trans-retinal

glycocholate

cholate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

all-trans-retinyl palmitate

3'-dephospho-CoA

succinyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

propanoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

palmitoleoyl-CoA

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

chorismate

succinate

L-aspartate

fumarate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

(R)-lactate

(S)-lactate

oleate

palmitate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

β-alanine

L-leucine

L-proline

L-glutamine

glycine

L-alanine

D-glutamate

L-glutamate

L-histidine

L-arginine

L-lysine

L-tryptophan

L-tyrosine

L-phenylalanine

D-aspartate

D-alanine

seleno-L-homocysteine

L-aspartyl-4-phosphate

3-phospho-L-serine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-methionine

L-cysteine

L-cystathionine

L,L-diaminopimelate

L-asparagine

L-threonine

L-ornithine

L-valine

L-isoleucine

L-citrulline

L-homoserine

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-canaline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycerol

methanol

ethanol

(S)-propane-1,2-diol

myo-inositol

D-ononitol

D-galactosylononitol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

galactinol

trans,octacis-decaprenyl phosphate

β-carotene 15,15' epoxide

15,15'-dihydroxy-β-carotene

β-carotene

di-trans,octa-cis-undecaprenyl phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

raffinose

stachyose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

β-D-fructofuranose

keto-D-fructose

D-xylulose

β-D-xylopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

N-acetyl-α-D-glucosamine 1-phosphate

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-α-D-glucose

ADP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

diacetyl

methylglyoxal

formaldehyde

(S)-lactaldehyde

CDP

dCDP

UDP

dTDP

dUTP

CTP

dTTP

dCTP

dCMP

dUMP

dTMP

UTP

uracil

CMP

UMP

cytidine

uridine

guanine

adenine

hypoxanthine

xanthosine

guanosine

adenosine

inosine

ITP

GTP

ATP

GDP

ADP

IMP

XMP

GMP

AMP

dATP

dGTP

dADP

dGDP

dGMP

dAMP

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

adenylo-succinate

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA