an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

autoinducer 2

N-carbamoyl-2-oxoglycine

oxamate

(S)-ureidoglycolate

2-keto-L-gulonate

quinolinate

4-aminobutanoate

6-phospho D-glucono-1,5-lactone

N-succinyl-L,L-2,6-diaminopimelate

carboxyphosphate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

O-ureido-L-homoserine

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

ethanolamine

2-C-methyl-D-erythritol 4-phosphate

carbonic acid

propanoyl phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

selenophosphate

thiamine triphosphate

thiamine diphosphate

hydrogen peroxide

chloroacetaldehyde

3-dehydroquinate

3-dehydroshikimate

hexulose 6-phosphate

methylsalicylate

3-phosphooxypyruvate

N5-(L-1-carboxyethyl)-L-ornithine

(lipoyl)adenylate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

α-D-glucosamine 1-phosphate

citrate

O-acetyl-L-serine

1,4-dihydroxy-2-naphthoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-histidinol phosphate

histidinol

2-dehydropantoate

3-methyl-2-oxobutanoate

butanoyl phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

β-D-ribosylnicotinate

ethyl acetate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

DNA without lesion

glycolate

salicyl alcohol

prenyl diphosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

(R)-pantothenate

(R)-4'-phosphopantothenate

(R)-mevalonate

N-acetyl-D-muramate 6-phosphate

CDP-glycerol

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

xanthine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

carbamoyl phosphate

isopentenyl diphosphate

(S)-dihydroorotate

orotidine 5'-phosphate

4'-phosphopantetheine

acetyl phosphate

S-ribosyl-L-homocysteine

nicotinate adenine dinucleotide

D-gluconate 6-phosphate

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

acrylamide

acrylate

propionamide

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

oxaloacetate

succinate semialdehyde

3-deoxy-D-glycero-2,5-hexodiulosonate

5-dehydro-D-gluconate

5-methylcytosine

glycerone phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

glutathione disulfide

CO₂

H₂O

phosphoenolpyruvate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

demethylmenaquinol-8

NADH

NADPH

NADP⁺

NAD⁺

hydroxyl radical

superoxide

(2E,6E)-farnesyl diphosphate

N-acetyl-β-neuraminate

sulfate

hydrogensulfite

OH^-

selenide

thiosulfate

sulfite

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

Fe³⁺

H⁺

ammonium

Fe²⁺

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

thiocyanate

glutathione

(R)-S-lactoylglutathione

2-iminopropanoate

2-aminoprop-2-enoate

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

spermidine

spermine

putrescine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

hydroquinone

2,3-dihydroxybenzoate

salicylate

4-aminobenzoate

preQ₀

hydrogen cyanide

(R)-lipoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

riboflavin

nicotinate

pyridoxal

pyridoxal 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

all-trans-retinol

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

geranyl acetate

butyl acetate

(E)-glutaconyl-CoA

isobutanoyl-CoA

succinyl-CoA

CoA-disulfide

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

crotonyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

butanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

D-glucono-1,5-lactone

all-trans-retinyl palmitate

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(S)-lactate

(R)-lactate

(R)-glycerate

palmitate

butanoate

acetate

D-mannonate

(R)-pantoate

orotate

D-gluconate

4-deoxy-L-threo-hex-4-enopyranuronate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

carbamate

L-cysteine

L,L-diaminopimelate

L-lysine

L-tyrosine

L-leucine

L-ornithine

L-proline

L-glutamine

L-arginine

L-asparagine

L-alanine

L-valine

L-isoleucine

L-threonine

L-glutamate

L-aspartate

L-aspartyl-4-phosphate

L-serine

L-methionine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

glycine

L-citrulline

L-homocysteine

L-canaline

L-homoserine

hypoglycin A

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

meso-diaminopimelate

β-alanine

D-glutamate

D-aspartate

D-alanine

3-phospho-L-serine

S-methyl-L-cysteine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

pyruvate

2-oxoglutarate

2-oxobutanoate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

formate

propanoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

hypoglycin B

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

glycerol

butan-1-ol

methanol

ethanol

geraniol

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

β-D-fructofuranose

α-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

β-D-galactopyranose

α-D-galactopyranose

D-glyceraldehyde

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

UDP-α-D-galactose

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

UDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

L-idonate

(R)-acetoin

diacetyl

methylglyoxal

formaldehyde

acetaldehyde

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCMP

uridine 3'-monophosphate

cytidine-3'-monophosphate

dTDP

dTTP

dUTP

dCTP

UTP

CTP

dUDP

UDP

dCDP

CDP

cytosine

uracil

dTMP

dUMP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

5-fluorouracil

UMP

CMP

hypoxanthine

adenine

guanine

isoguanine

preQ₁

xanthosine

guanosine

adenosine

inosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

dGMP

dITP

dGTP

dATP

dIDP

dADP

dGDP

ITP

GTP

ATP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

7,8-dihydrolumazine

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin

7,8-dihydropteroate

adenosylcobalamin

cob(I)alamin

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-dGTP

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

pppGpp

ppGpp

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenylo-succinate

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

5-fluorocytosine

5'-deoxy-5'-fluoroadenosine

DNA with lesion

ethylphosphate

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoporphyrinogen IX

protoporphyrin IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

(S)-ureidoglycine