an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
bisorganyltrisulfane
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
ammonia
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
N-succinyl-L,L-2,6-diaminopimelate
quinolinate
urea
presqualene diphosphate
glutathione disulfide
N-(5-phosphoribosyl)-anthranilate
(R)-pantothenate
(R)-4'-phosphopantothenate
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
12-methyltetradecanoate
glucosyl-4,4'-diaponeurosporenoate
4,5-dihydroxyphthalate
15-cis-4,4'-diapophytoene
D-gluconate 6-phosphate
(R)-mevalonate
L-histidinol phosphate
histidinol
ethyl acetate
isochorismate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate
luteolin 7-O-β-D-diglucuronide
luteolin 7-O-β-D-glucuronide
2-dehydropantoate
N5-(L-1-carboxyethyl)-L-ornithine
shikimate
3-dehydroshikimate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
prephenate
4-hydroxy-2-nonenal
2-hydroxyformononetin
(3R)-sophorol
2'-hydroxypseudobaptigenin
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
1,4-dihydroxy-2-naphthoate
O-acetyl-L-serine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-C-methyl-D-erythritol 4-phosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
2-methyl-1,4-benzoquinone
methyl-1,4-benzoquinol
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
β-D-ribosylnicotinate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
methylsalicylate
salicyl alcohol
3-phosphooxypyruvate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
α-D-glucosamine 1-phosphate
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-2-amino-6-ketopimelate
chloroacetaldehyde
(lipoyl)adenylate
thiamine triphosphate
S-ribosyl-L-homocysteine
autoinducer 2
selenophosphate
4-amino-4-deoxychorismate
2-(α-hydroxyethyl)thiamine diphosphate
3-methyl-2-oxobutanoate
4'-phosphopantetheine
thiamine diphosphate
propanoyl phosphate
glycolate
L-canavanine
DNA without lesion
2-keto-D-gluconate
2,5-didehydro-D-gluconate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
Nβ-acetylstreptothricin F
(S)-dihydroorotate
carboxyphosphate
orotidine 5'-phosphate
carbonic acid
prenyl diphosphate
ethanolamine
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
hydrogen peroxide
glycerone phosphate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
xanthine
CDP-glycerol
ManNAc-GlcNAc-PP-undecaprenol
S-formylglutathione
5-methylcytosine
dihydroxyacetone
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
CO2
γ-L-glutamyl 5-phosphate
carbamoyl phosphate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
acetyl phosphate
oxaloacetate
isopentenyl diphosphate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
acrylamide
acrylate
propionamide
4-guanidinobutyramide
4-guanidinobutanoate
(indol-3-yl)acetamide
phosphoenolpyruvate
H2O
(glutathion-S-yl)-4-hydroxy-2-nonenal
DNA with lesion
L-homocysteine
ethylphosphate
hydrogen cyanide
adenosylcobalamin
cob(I)alamin
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
protoporphyrinogen IX
protoporphyrin IX
hydrogen sulfide
oxygen
2-iminosuccinate
2-iminobutanoate
2-iminopropanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
3-(all-trans-octaprenyl)benzene-1,2-diol
2-octaprenylphenol
2-methoxy-6-(all-trans-octaprenyl)phenol
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
FAD
FADH2
FMNH2
FMN
(S)-NADHX
(R)-NADHX
ubiquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
NADPH
NADH
NADP+
NAD+
hydroxyl radical
superoxide
(2E,6E)-farnesyl diphosphate
pristanate
Fe3+
H+
ammonium
Fe2+
Zn2+
hydrogensulfite
OH-
thiosulfate
sulfite
selenide
hydrogencarbonate
phosphate
triphosphate
diphosphate
chloride
γ-L-glutamyl-[(S)-allyl]-L-cysteine
S-allyl-L-cysteine
γ-L-glutamyl-(S)-methyl-L-cysteine
γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine
S-trans-1-propenyl-L-cysteine
S-(hydroxymethyl)glutathione
thiocyanate
glutathione
S-sulfanylglutathione
5-(2-hydroxyethyl)-4-methylthiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
(R)-S-lactoylglutathione
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
cadaverine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
4-hydroxybenzoate
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
hydroquinone
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
luteolin
2,3-dihydroxybenzoate
protocatechuate
salicylate
4-aminobenzoate
preQ0
(R)-lipoate
coenzyme A
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
riboflavin
nicotinate
thiamine
all-trans-retinol
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
glycocholate
cholate
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
4,4'-diapolycopenedioate glycosyl diester
geranyl acetate
butyl acetate
D-glucono-1,5-lactone
all-trans-retinyl palmitate
(S)-3-hydroxy-3-methylglutaryl-CoA
CoA-disulfide
isobutanoyl-CoA
3'-dephospho-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
4-hydroxybutanoyl-CoA
(E)-glutaconyl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
acetyl-CoA
malonyl-CoA
crotonyl-CoA
phytenoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
18-hydroxylinoleoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxyoleoyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(Z)-15-tetracosenoyl-CoA
butanoyl-CoA
propanoyl-CoA
octanoyl-CoA
lauroyl-CoA
decanoyl-CoA
pristanoyl-CoA
cis-vaccenoyl-CoA
myristoyl-CoA
palmitoleoyl-CoA
stearoyl-CoA
palmitoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
acetamide
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
4,4'-diapolycopenedioate
chorismate
(3E)-2-oxohex-3-enedioate
fumarate
succinate
L-aspartate
α,ω-9Z-octadecenedioate
pyruvate
acetate
formate
propanoate
(S)-lactate
(R)-lactate
butanoate
octanoate
laurate
decanoate
7-hydroxylaurate
4-hydroxybutanoate
sophorosyloxydocosanoate
13-sophorosyloxydocosanoate 6',6''-diacetate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
18-hydroxyoleate
18-hydroxystearate
16-hydroxypalmitate
(15Z)-tetracosenoate
oleate
α-linolenate
linoleate
stearate
palmitate
phytenate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
D-gluconate
(R)-pantoate
orotate
D-mannonate
(S)-1-pyrroline-5-carboxylate
D-tagaturonate
β-D-glucuronate
aldehydo-D-galacturonate
L-α-amino-ε-keto-pimelate
carbamate
L-serine
β-alanine
L-leucine
L-proline
L-glutamine
L-alanine
glycine
D-glutamate
L-glutamate
L-lysine
L-arginine
L-tyrosine
D-aspartate
D-alanine
S-sulfanyl-L-cysteine
L-aspartyl-4-phosphate
3-phospho-L-serine
S-methyl-L-cysteine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
N-acetyl-L-glutamate
N-acetyl-L-methionine
trans-4-hydroxy-L-proline
L-threonine
L,L-diaminopimelate
L-asparagine
L-cystathionine
L-ornithine
L-isoleucine
L-valine
L-methionine
L-cysteine
L-citrulline
L-cystine
L-canaline
L-homoserine
O-phospho-L-homoserine
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
O-succinyl-L-homoserine
L-aspartate 4-semialdehyde
meso-diaminopimelate
2-oxobutanoate
2-oxoglutarate
sn-glycero-3-phosphoethanolamine
glycerophosphoglycerol
glycerophosphoserine
glycerol
D-mannitol 1-phosphate
butan-1-ol
methanol
ethanol
geraniol
4,4'-diaponeurosporenoate
4,4'-diaponeurosporenal
all-trans-4,4'-diaponeurosporene
all-trans-4,4'-diapophytofluene
all-trans-4,4'-diapo-ζ-carotene
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
4,4'-diapolycopen-4,4'-dial
all-trans-4,4'-diapolycopene
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
1,2-dimyristoyl-sn-glycerol 3-phosphate
dioleoyl phosphatidate
staphyloxanthin
streptothricin F
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
1-(β-D ribofuranosyl)nicotinamide
maltotriose
raffinose
maltotetraose
stachyose
maltopentaose
maltoheptaose
maltohexaose
sucrose
β-D-fructofuranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-ribopyranose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
D-glyceraldehyde
α-D-glucopyranose
β-D-glucopyranose
α-D-galactopyranose
β-D-galactopyranose
1-O-acetyl-α-maltose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
D-ribulose-1,5-bisphosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
UDP-α-D-glucose
ADP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramate
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
methyl β-D-glucoside 6-phosphate
D-altronate
methylglyoxal
formaldehyde
acetaldehyde
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
uridine 3'-monophosphate
cytidine-3'-monophosphate
dCMP
dTDP
dTTP
dUTP
CTP
dCTP
UTP
dTMP
dUMP
cytosine
uracil
dUDP
UDP
dCDP
CDP
5-fluorouracil
UMP
CMP
uridine
cytidine
2'-deoxycytidine
thymidine
2'-deoxyuridine
thymine
adenine
guanine
hypoxanthine
isoguanine
preQ1
xanthosine
guanosine
inosine
adenosine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
ITP
GTP
ATP
IDP
GDP
ADP
XMP
IMP
GMP
AMP
dITP
dGTP
dATP
dIDP
dADP
dGDP
6,7-dimethyl-8-(1-D-ribityl)lumazine
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
(3R)-vestitone
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
8-oxo-GTP
8-oxo-dGTP
cyclic-AMP
adenosine 3'-monophosphate
guanosine 3'-monophosphate
pppGpp
ppGpp
adenylo-succinate
5-fluorocytosine
cyclic di-3',5'-guanylate
5-hydroxy-CTP
2-hydroxy-dATP
β-nicotinamide D-ribonucleotide