an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

bisorganyltrisulfane

1,2-dihydro-β-NADP

enol-phenylpyruvate

4-oxoglutaramate

ammonia

selenodiglutathione

glutathioselenol

7-carboxy-7-deazaguanine

H₂

hydrogen selenide

5-amino-6-(5-phospho-D-ribitylamino)uracil

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran-borate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dialurate

2-amino-3-carboxymuconate-6-semialdehyde

propane-1,3-diamine

histamine

3-keto-L-gulonate 6-phosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

3-methyl-2-butenal

4-hydroxy-2-nonenal

(R)-mevalonate

urea-1-carboxylate

urea

(2S)-4-acetamido-2-aminobutanoate

ectoine

aminoacetone

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

(S)-3-methyl-2-oxopentanoate

N⁵-carboxyaminoimidazole ribonucleotide

(R)-4'-phosphopantothenate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

autoinducer 2

carbonic acid

(R)-pantothenate

5'-phosphoguanylyl(3'→5')guanosine

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-guanidino-2-oxopentanoate

selenophosphate

S-formylglutathione

isopentenyl diphosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

N-(2,3-dihydroxybenzoyl)-L-serine dimer

N-(2,3-dihydroxybenzoyl)-L-serine

N-(2,3-dihydroxybenzoyl)-L-serine trimer

(L-seryl)adenylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

4-aminobutanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

histidinal

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

L-selenocystathionine

carboxynorspermidine

norspermidine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

N-ethylmaleimide

N-ethylsuccinimide

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

ethanolamine

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

homogentisate

(2-hydroxyphenyl)acetate

3-oxopropanoate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

(indol-3-yl)pyruvate

6-phospho D-glucono-1,5-lactone

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

DNA without lesion

4-imidazolone-5-propanoate

quinolinate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

pimeloyl-CoA

urocanate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

4-amino-4-deoxychorismate

propanoyl phosphate

chloroacetaldehyde

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

citrate

lipid X

lipid A disaccharide (E. coli)

2-C-methyl-D-erythritol 4-phosphate

thiamine diphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

γ-L-glutamyl 5-phosphate

2-dehydropantoate

xanthine

S-ribosyl-L-homocysteine

(R)-1-amino-2-propanol O-2-phosphate

(R)-1-aminopropan-2-ol

carboxyphosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

3-amino-1-hydroxyacetone 1-phosphate

3-phosphooxypyruvate

3-methyl-2-oxobutanoate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

hydroxypyruvate

5-oxo-L-proline

3'-phosphoadenylyl-sulfate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

2-phosphoglycolate

glycolate

shikimate

shikimate 3-phosphate

L-canavanine

L-arginino-succinate

canavaninosuccinate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

O-acetyl-L-serine

5-carboxymethyl-2-hydroxymuconate

1,4-dihydroxy-2-naphthoate

O-ureido-L-homoserine

carbamoyl phosphate

3-dehydroquinate

3-dehydroshikimate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

ADP-D-glycero-β-D-manno-heptose

lipid IV_A

ADP-L-glycero-β-D-manno-heptose

(R)-4'-phosphopantothenoyl-L-cysteine

orotidine 5'-phosphate

N-acetyl-D-muramate 6-phosphate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

nicotinate adenine dinucleotide

preuroporphyrinogen

coproporphyrinogen III

(S)-4-amino-5-oxopentanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

prephenate

(S)-dihydroorotate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

oxalosuccinate

3-demethylubiquinol-6

3-deoxy-D-arabino-heptulosonate 7-phosphate

formamide

succinate semialdehyde

dethiobiotin

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

acetyl phosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

CO₂

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

5-enolpyruvoyl-shikimate 3-phosphate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(S)-2,3,4,5-tetrahydrodipicolinate

hydrogen peroxide

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

oxaloacetate

phosphoenolpyruvate

glycerone phosphate

4'-phosphopantetheine

glutathione disulfide

5-aminolevulinate

porphobilinogen

α-D-glucosamine 1-phosphate

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

cob(I)inamide

cob(I)yrinate a,c-diamide

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cobinamide phosphate

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

3-(all-trans-nonaprenyl)benzene-1,2-diol

3-(all-trans-decaprenyl)benzene-1,2-diol

3-(all-trans-heptaprenyl)benzene-1,2-diol

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-heptaprenylphenol

2-decaprenylphenol

2-nonaprenylphenol

2-octaprenylphenol

2-methoxy-6-(all-trans-nonaprenyl)phenol

6-(all-trans-decaprenyl)-2-methoxy-phenol

2-methoxy-6-(all-trans-heptaprenyl)phenol

2-methoxy-6-(all-trans-octaprenyl)phenol

ethene

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

FADH₂

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

caldariellaquinol

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-9

ubiquinol-10

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-10

caldariellaquinone

NADH

NADPH

NAD⁺

NADP⁺

glycine betaine

hydroxyl radical

superoxide

(2E,6E)-farnesyl diphosphate

pristanate

Fe³⁺

ammonium

H⁺

Fe²⁺

sulfate

hydrogensulfite

selenite

OH^-

selenide

tetrahydroxoborate

thiosulfate

sulfite

molybdate

selenate

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

S-(hydroxymethyl)glutathione

S-methyl-L-methionine

methanethiol

glutathione amide perthiol

thiocyanate

glutathione amide

glutathione amide disulfide

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

(R)-S-lactoylglutathione

3-sulfino-L-alanine

betaine aldehyde

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

spermidine

spermine

putrescine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

6-methoxy-3-methyl-2-all-trans-heptaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-nonaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-heptaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-nonaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

quercetin

2,3-dihydroxybenzoate

enterobactin

4-aminobenzoate

preQ₀

molybdopterin

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

nicotinate

thiamine

riboflavin

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

(+)-7-epi-jasmonate

N⁶-dimethylallyladenine

isobutanoyl-CoA

CoA-disulfide

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

(E)-glutaconyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

succinyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

malonyl-CoA

3'-dephospho-CoA

acetyl-CoA

crotonyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

phytenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

pristanoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

palmitoleoyl-CoA

palmitoyl-CoA

stearoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

acetoacetyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

chorismate

fumarate

succinate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

cis-2-methylaconitate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-aconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

D-threo-isocitrate

pyruvate

acetate

formate

(R)-lactate

7-hydroxylaurate

decanoate

laurate

octanoate

16-hydroxypalmitate

18-hydroxystearate

18-hydroxyoleate

(15Z)-tetracosenoate

oleate

palmitate

stearate

linoleate

α-linolenate

phytenate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

5-deoxy-D-glucuronate

D-gluconate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

β-alanine

(S)-3-amino-2-methylpropanoate

L-proline

L-alanine

glycine

L-glutamine

L-leucine

L-glutamate

D-glutamate

L-histidine

L-arginine

L-lysine

L-tyrosine

L-phenylalanine

L-tryptophan

D-arginine

D-alanine

iminoarginine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

3-phospho-L-serine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-acetyl-L-methionine

trans-4-hydroxy-L-proline

N-α-acetyl lysine methyl ester

L-methionine

L-cysteine

L-isoglutamine

L-2,4-diaminobutanoate

L-isoleucine

L-cystathionine

L,L-diaminopimelate

L-asparagine

L-threonine

L-valine

L-ornithine

L-citrulline

O-succinyl-L-homoserine

1-aminocyclopropane-1-carboxylate

L-cystine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-canaline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homoserine

L-aspartate 4-semialdehyde

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

glycerol

D-ribitol

D-mannitol 1-phosphate

ethanol

methanol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

D-myo-inositol (1,3,4)-trisphosphate

D-myo-inositol (1,4,5)-trisphosphate

D-myo-inositol (1,3,4,5)-tetrakisphosphate

D-myo-inositol (1,4)-bisphosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-Kdo8N-(2→6)-lipid IV_A

4-O-phospho-α-Kdo8N-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

maltotriose

cellotetraose

β-D-cellobiose

raffinose

maltotetraose

stachyose

maltopentaose

maltoheptaose

maltohexaose

sucrose

β-D-fructofuranose

D-ribulose

L-ribulose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-ribopyranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

β-D-allopyranose

β-D-allofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

ADP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-mannosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-3-dehydro-6-deoxy-α-D-galactopyranose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

CDP-4-dehydro-6-deoxy-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

L-ascorbate 6-phosphate

β-D-fructofuranose 6-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

diacetyl

methylglyoxal

(R)-acetoin

formaldehyde

acetaldehyde

precorrin-2

precorrin-1

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCMP

dTDP

cytidine-3'-monophosphate

uridine 3'-monophosphate

dTTP

dUTP

dCTP

CTP

dTMP

dUMP

dUDP

UDP

dCDP

CDP

uracil

UTP

CMP

UMP

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

hypoxanthine

guanine

adenine

isoguanine

preQ₁

inosine

adenosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

ITP

GTP

ATP

IDP

GDP

ADP

IMP

GMP

XMP

AMP

dITP

dGTP

dATP

dIDP

dADP

dGDP

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

7,8-dihydromonapterin

7,8-dihydromonapterin triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

5,6,7,8-tetrahydromonapterin

(6R)-4a-hydroxy-tetrahydrobiopterin

6-carboxy-5,6,7,8-tetrahydropterin

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-GMP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-dGTP

8-oxo-dGMP

cyclic-AMP

cyclic-GMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

adenylo-succinate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

cyclic di-3',5'-guanylate

5-hydroxy-CTP

2-hydroxy-dATP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA