an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

carboxyphosphate

carbamoyl phosphate

(S)-dihydroorotate

CO₂

orotidine 5'-phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

N-(5-phosphoribosyl)-anthranilate

3-deoxy-D-glycero-2,5-hexodiulosonate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

γ-L-glutamyl 5-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

oxaloacetate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

phosphoenolpyruvate

acetyl phosphate

S-ribosyl-L-homocysteine

formate

4'-phosphopantetheine

isopentenyl diphosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

N-acetyl-L-glutamate 5-semialdehyde

L-selenocystathionine

2-dehydropantoate

o-(α-D-glucosyl)-polyglycerol phosphate

poly (glycerol phosphate)

2,5-didehydro-D-gluconate

2-keto-D-gluconate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

thiamine phosphate

histidinol

L-histidinol phosphate

histidinal

anthranilate

3-hydroxypropanal

1,3-propanediol

luteolin 7-O-β-D-glucuronide

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

β-D-fructose 2,6-bisphosphate

acetoacetate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate 3-phosphate

(lipoyl)adenylate

3-phosphooxypyruvate

glycolate

(indol-3-yl)pyruvate

xanthine

(R)-4'-phosphopantothenate

(R)-pantothenate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-methylbenzyl alcohol

3-methylbenzaldehyde

3-methylbenzyl alcohol

DNA without lesion

autoinducer 2

L-canavanine

glycerone phosphate

methylsalicylate

salicyl alcohol

α-D-glucosamine 1-phosphate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

β-D-ribosylnicotinate

6-phospho D-glucono-1,5-lactone

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

3-methyl-2-oxobutanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(R)-5-phosphomevalonate

(R)-mevalonate

(R)-mevalonate diphosphate

prenyl diphosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

propanoyl phosphate

thiamine diphosphate

CDP-glycerol

1,4-dihydroxy-2-naphthoate

3-deoxy-D-manno-octulosonate 8-phosphate

selenophosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

O-acetyl-L-serine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

glutathione disulfide

12α-hydroxy-3-oxocholan-24-oyl-CoA

deoxycholoyl-CoA

allopregnanolone

3-oxocholoyl-CoA

N-acetylglutamyl-phosphate

urea

hydrogen peroxide

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

quinolinate

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-succinyl-L,L-2,6-diaminopimelate

N⁵-carboxyaminoimidazole ribonucleotide

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

mercuriphenyl acetate

prephenate

3-dehydroshikimate

shikimate

aminoacetone

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-cysteine

L-methionine

L-glutamate

L-glutamine

L-serine

L-aspartate

L-tryptophan

L-threonine

L-phenylalanine

glycine

L-alanine

L-arginine

L-asparagine

L-histidine

L-proline

L-tyrosine

L-lysine

L-leucine

L-homocysteine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

O-succinyl-L-homoserine

L-homoserine

O-phospho-L-homoserine

L-ornithine

L-canaline

meso-diaminopimelate

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

L,L-diaminopimelate

D-glutamate

D-aspartate

D-alanine

β-alanine

salicylate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

acetate

orotate

(R)-pantoate

D-gluconate

D-mannonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-galacturonate

β-D-glucuronate

pristanate

octanoate

palmitate

stearate

decanoate

laurate

7-hydroxylaurate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

oleate

(15Z)-tetracosenoate

phytenate

linoleate

α-linolenate

(R)-lactate

(S)-lactate

2-oxoglutarate

2-oxobutanoate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

3-carboxy-cis,cis-muconate

chorismate

(3E)-2-oxohex-3-enedioate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

all-trans-retinyl palmitate

all-trans-retinol

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-ribopyranose

α-D-xylopyranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

glycolaldehyde

keto-D-fructose

D-xylulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

isoprimeverose

sucrose

α,α-trehalose

stachyose

raffinose

selaginose

benzyl alcohol

catechol

ethanol

methanol

methylglyoxal

4-methylbenzaldehyde

benzaldehyde

acetaldehyde

(R)-acetoin

diacetyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

urate

benzene

luteolin

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

demethylmenaquinol-8

3-chlorobenzaldehyde

3-chlorobenzyl alcohol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

GMP

IMP

AMP

XMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dADP

dIDP

dGTP

dATP

dITP

dAMP

dGMP

hypoxanthine

adenosine

guanosine

xanthosine

inosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FMNH₂

reduced riboflavin

FMN

riboflavin

thymine

uracil

preQ₁

CDP

dCDP

UDP

dUDP

dTMP

dUMP

CTP

dTDP

UTP

dUTP

dCMP

dCTP

dTTP

UMP

CMP

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

coenzyme A

(R)-lipoate

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

ppGpp

pppGpp

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

nicotinate

thiamine

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine 5'-phosphate

pyridoxine

pyridoxal 5'-phosphate

pyridoxal

androsterone

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

campest-4-en-3-one

(+)-7-epi-jasmonate

17-β-hydroxy-5-α-androstan-3-one

testosterone

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

5-α-pregnane-3,20-dione

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

7α-hydroxy-5β-cholestan-3-one

7α,12α-dihydroxy-5β-cholestan-3-one

campest-4-en-3β-ol

5α-androstane-3,17-dione

androst-4-ene-3,17-dione

5β-cholestane-3α,7α,12α-triol

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

cholate

glycocholate

3-dehydrocholate

deoxycholate

isocholate

3'-dephospho-CoA

malonyl-CoA

acetyl-CoA

succinyl-CoA

CoA-disulfide

isobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

choloyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

acetoacetyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

decanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

octanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

phytenoyl-CoA

glutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

methanethiol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

sn-glycero-3-phosphoethanolamine

hydrogencarbonate

selenide

chloride

phosphate

diphosphate

Hg²⁺

ammonium

H⁺

2-chloroacetate

preQ₀

2-octaprenylphenol

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

Hg⁰

ethylphosphate

DNA with lesion