an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

ammonia

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

4-oxoglutaramate

2-oxoglutaramate

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

selenodiglutathione

glutathioselenol

3-ureidopropanoate

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

vanillin

5-oxo-L-proline

4-imidazolone-5-propanoate

urocanate

4-amino-2-methyl-5-pyrimidinemethanol

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-amino-5-oxopentanoate

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(S)-ureidoglycolate

acetoacetate

hydrogen selenide

L-xylo-hex-3-ulono-1,4-lactone

2-dehydro-6-phospho-D-gluconate

2-amino-3-carboxymuconate-6-semialdehyde

isopropylamine

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

urea

4-aminobutanoate

dialurate

H₂

acetyl phosphate

arsenite

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

succinate semialdehyde

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

imidazole acetaldehyde

4-imidazoleacetate

5-hydroxyindole acetate

3,4-dihydroxyphenylacetaldehyde

prop-2-ynal

propynoate

D-glucurono-6,3-lactone

dimethylsulfoniopropanoate

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

hydroxyatrazine

N-isopropylammelide

ethylamine

oxalosuccinate

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

L-gulono-1,4-lactone

pimeloyl-CoA

propanoyl phosphate

pyrazine-2-carboxylate

dihydroxyacetone

hydroxypyruvate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

2-keto-D-gluconate

4'-phosphopantetheine

N-acetyl-D-muramate 6-phosphate

β-D-fructose 2,6-bisphosphate

2-keto-L-gulonate

2,5-didehydro-D-gluconate

5-methylcytosine

3-hydroxypropanoate

3-oxopropanoate

quinolinate

creatinine

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-pyridoxolactone

(R)-1-amino-2-propanol O-2-phosphate

5,6-dimethylbenzimidazole

α-ribazole

α-ribazole 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

N-ethylmaleimide

N-ethylsuccinimide

β-nicotinate D-ribonucleotide

glutathione disulfide

preuroporphyrinogen

2-maleylacetate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

lipid IV_A

dethiobiotin

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

carbon monoxide

L-β-lysine

lipid X

lipid A disaccharide (E. coli)

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

4-hydroxy-2-nonenal

hydrogenobyrinate

homogentisate

(2-hydroxyphenyl)acetate

L-selenocystathionine

3-deoxy-α-D-manno-2-octulosonate

tryptamine

hydrogenobyrinate a,c-diamide

2-iminoacetate

thiamine phosphate

DNA without lesion

squalene

hop-22(29)-ene

prephytoene diphosphate

L-arogenate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

2-phosphoglycolate

glycolate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

shikimate

3-dehydroshikimate

O-acetyl-L-serine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

L-histidinol phosphate

6-phospho D-glucono-1,5-lactone

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

ethanolamine

carbonic acid

trimethylamine

trimethylamine N-oxide

dimethyl sulfoxide

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

N-succinyl-L,L-2,6-diaminopimelate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

prenyl diphosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

S-adenosyl 3-(methylsulfanyl)propylamine

nicotinate adenine dinucleotide

citrate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

γ-L-glutamyl 5-phosphate

xanthine

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

N-acetyl-L-glutamate 5-semialdehyde

5-dehydro-D-gluconate

histidinal

histidinol

5-amino-6-(D-ribitylamino)uracil

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-2-isopropylmalate

coproporphyrinogen III

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

L-canavanine

hydrogen peroxide

S-formylglutathione

glycerone phosphate

oxaloacetate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

carbamoyl phosphate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(S)-dihydroorotate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

(R)-pantothenate

prephenate

3-demethylubiquinol-6

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-aminolevulinate

porphobilinogen

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

3-deoxy-D-manno-octulosonate 8-phosphate

orotidine 5'-phosphate

CO₂

phosphoenolpyruvate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

5-phospho-β-D-ribosylamine

α-D-glucosamine 1-phosphate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

N-acetylglutamyl-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

H₂O

N-succinyl-2-amino-6-ketopimelate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

ethylphosphate

adenosyl-cobinamide phosphate

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

adenosylcobyrate

cob(I)alamin

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cobyrinate

cob(II)yrinate a,c-diamide

protoheme

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

siroheme

hydrogen sulfide

oxygen

S⁰

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

monodehydroascorbate radical

hydroxyl radical

superoxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

4-methylphenol

L-homocysteine

3-dimethylsulfoniopropionaldehyde

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

S-(hydroxymethyl)glutathione

3-sulfino-L-alanine

methanethiol

thiocyanate

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

methanesulfonate

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

(R)-S-lactoylglutathione

Fe³⁺

ammonium

H⁺

Co²⁺

Fe²⁺

trimethyl sulfonium

hydrogensulfite

OH^-

selenite

thiosulfate

sulfite

selenate

hydrogencarbonate

sulfate

phosphate

triphosphate

diphosphate

chloride

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

putrescine

spermidine

betaine aldehyde hydrate

choline

betaine aldehyde

glycine betaine

2-phenylethylamine

serotonin

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

allantoate

acetamide

(S)-(+)-allantoin

pyrazinamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(indol-3-yl)acetate

(S)-3-aminobutanoyl-CoA

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

acetyl-CoA

malonyl-CoA

succinyl-CoA

crotonyl-CoA

phytenoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

decanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

tributyrin

1,2-dibutyrin

FAD

FMN

FMNH₂

(S)-NADHX

(R)-NADHX

NADPH

NADH

NAD⁺

NADP⁺

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

coenzyme A

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

L-ascorbate

nicotinate

thiamine

riboflavin

4-pyridoxate

pyridoxine

pyridoxamine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-5

precorrin-6B

precorrin-6A

precorrin-3B

precorrin-4

precorrin-3A

precorrin-2

precorrin-1

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dAMP

dGMP

dIMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

GMP

IMP

AMP

XTP

ITP

GTP

ATP

cytosine

dCMP

5,6-dihydrothymine

5,6-dihydrouracil

dTTP

dCTP

dUDP

dCDP

CDP

uracil

orotate

dTMP

dTDP

dUTP

dUMP

UTP

CTP

UDP

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-galactosamine

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

isoguanine

preQ₁

baicalein

6,7-dehydrobaicalein

acrylonitrile

(indole-3-yl)acetonitrile

preQ₀

salicylaldehyde

cyanuric acid

urate

4-hydroxybenzoate

4-tyrosol

atrazine

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

2,3-dihydroxybenzoate

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

L-dopa

dopamine

protocatechuate

salicylate

vanillate

benzoate

4-aminobenzoate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

L-aspartate

fumarate

(S)-malate

D-glucarate

cis-aconitate

D-threo-isocitrate

(S)-lactate

(R)-lactate

propanoate

acetate

formate

pyruvate

butanoate

decanoate

octanoate

(2E,6E)-farnesoate

(15Z)-tetracosenoate

oleate

apo-4'-lycopenoate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

pristanate

palmitate

D-gluconate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

L-α-amino-ε-keto-pimelate

L-serine

creatine

β-alanine

(R)-β-lysine

L-leucine

L-proline

glycine

L-glutamine

L-alanine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-asparagine

L-tyrosine

L-threonine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

2-hydroxy-5-oxoproline

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-selenomethionine

L-threonine 3-O-phosphate

3-phospho-L-serine

sarcosine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-formyl-L-methionine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

5-hydroxy-L-tryptophan

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

L-canaline

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

1-aminocyclopropane-1-carboxylate

L-ornithine

meso-diaminopimelate

L-methionine

L-isoglutamine

L-cystathionine

L,L-diaminopimelate

methylglyoxal

diacetyl

glycolaldehyde

3-(N-morpholino)propanal

(2E,6E)-farnesal

butan-1-al

formaldehyde

1-propanal

isobutanal

1-octanal

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

methanol

ethanol

propan-1-ol

phytol

glycerol

xylitol

galactitol

D-Iditol

D-altritol

L-iditol

D-sorbitol

(3R)-linalool

(3S)-linalool

(2E,6E)-farnesol

3-dehydrosphinganine

(S)-propane-1,2-diol

myo-inositol

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

apo-4'-lycopenal

15-cis-phytoene

all-trans-phytoene

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

betalamate

miraxanthin V

betanidin

betanidin quinone

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

α,α-trehalose

6_G-kestotriose

1,1-kestotetraose

1-kestotriose

1,6-kestotetraose

6-kestotriose

6,6-kestotetraose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

keto-D-sorbose

keto-L-sorbose

keto-D-psicose

keto-D-fructose

β-D-fructofuranose

D-xylulose

L-xylulose

D-ribulose

L-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-idonate

L-gulonate

8-oxo-GTP

8-oxo-dGTP

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

5'-deoxyadenosine

5-fluorocytosine

2-hydroxy-dATP

5-hydroxy-CTP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate