an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-dehydro-ascorbate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

α-D-galacturonate 1-phosphate

2-amino-3-carboxymuconate-6-semialdehyde

selenodiglutathione

glutathioselenol

glutathione disulfide

3'-phosphoadenylyl-sulfate

N²-succinylglutamate

N²-succinyl-L-arginine

core oligosaccharide-lipid A (E. coli K-12 core type)

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

7-epicholate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-iminoacetate

acetoacetate

carbon monoxide

L-canavanine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-aminobutanoate

β-D-ribosylnicotinate

3-deoxy-α-D-manno-2-octulosonate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-phosphooxy-L-threonine

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

5-hydroxyindole thiazolidine carboxylate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

1-piperideine 6-carboxylate

3-dehydroshikimate

histidinal

histidinol

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

N-(5-phosphoribosyl)-anthranilate

anthranilate

porphobilinogen

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

2-oxopent-4-enoate

2-C-methyl-D-erythritol 4-phosphate

lipid IV_A

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

glycolate

prephenate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

DNA without lesion

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-amino-1-hydroxyacetone 1-phosphate

D-erythro-imidazole-glycerol-phosphate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(S)-2-amino-6-oxohexanoate

L-arginino-succinate

canavaninosuccinate

oxalosuccinate

pimeloyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

shikimate

4-guanidinobutyramide

selenophosphate

orotidine 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

3-deoxy-D-manno-octulosonate 8-phosphate

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(R)-pantothenate

carboxynorspermidine

norspermidine

α-D-glucosamine 1-phosphate

lipid X

lipid A disaccharide (E. coli)

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

shikimate 3-phosphate

prenyl diphosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-phosphooxypyruvate

dethiobiotin

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

indole-3-glycol

indole-3-glycol aldehyde

2-methylbutanol

2-methylbutanal

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

3-methylbutanol

3-methylbutanal

2-phenylethanol

S-ribosyl-L-homocysteine

autoinducer 2

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-carbamoylputrescine

4-hydroxybenzaldehyde

acetyl phosphate

4'-phosphopantetheine

(S)-dihydroorotate

ADP-L-glycero-β-D-manno-heptose

3-dehydroquinate

H₂

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

γ-L-glutamyl 5-phosphate

3-methyl-2-oxobutanoate

2-dehydropantoate

imidazole acetol-phosphate

L-histidinol phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

hydrogen selenide

O-acetyl-L-serine

hydrogen peroxide

preuroporphyrinogen

N-succinyl-L,L-2,6-diaminopimelate

carbamoyl phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

oxaloacetate

citrate

coproporphyrinogen III

phosphoenolpyruvate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-enolpyruvoyl-shikimate 3-phosphate

nicotinate adenine dinucleotide

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

thiamine phosphate

thiamine diphosphate

β-nicotinate D-ribonucleotide

quinolinate

CO₂

glycerone phosphate

ammonia

H₂O

urea

(2E,6E)-farnesyl diphosphate

4-methylphenol

L-homocysteine

DNA with lesion

protoheme

N₂

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

N-acetyl-D-mannosamine 6-phosphate

N-acetyl-β-neuraminate 9-phosphate

CMP-N-acetyl-β-neuraminate

superoxide

monodehydroascorbate radical

nitric oxide

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(indole-3-yl)acetonitrile

molybdopterin

coenzyme A

MoO₂-molybdopterin cofactor

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

FADH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

ubiquinol-8

3-demethylubiquinol-8

NADP⁺

NAD⁺

NADH

NADPH

L-ascorbate

riboflavin

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

trimethyl sulfonium

sulfate

selenite

selenate

selenide

thiosulfate

nitrite

nitrate

hydrogencarbonate

molybdate

phosphate

triphosphate

diphosphate

Fe²⁺

Zn²⁺

Mo²⁺

H⁺

ammonium

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

methanethiol

thiophenol

thiobenzoate

furfuryl thiol

S-sulfanylglutathione

thioanisole

(S)-methyl thiobenzoate

furfuryl methyl sulfide

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

butan-1-ol

ethanol

propan-1-ol

methanol

phytol

catechol

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3-dehydrocholate

isocholate

glycocholate

cholate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

N-acetyl-β-neuraminate

L-serine

β-alanine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-proline

glycine

L-leucine

L-alanine

L-glutamine

L-aspartate

L-cysteine

L-tyrosine

L-threonine

L-asparagine

L-tryptophan

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-glutamate

O-acetyl-L-homoserine

3-phospho-L-serine

L-methionine

L-isoleucine

L-selenocysteine

L-valine

L-ornithine

L-cystathionine

L,L-diaminopimelate

L-citrulline

L-4-hydroxyglutamate semialdehyde

L-glutamate-5-semialdehyde

L-homoserine

O-phospho-L-homoserine

O-succinyl-L-homoserine

L-canaline

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

chorismate

fumarate

succinate

(S)-malate

(R)-lactate

acetate

pyruvate

formate

propanoate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

4-aminobenzoate

palmitate

orotate

(R)-pantoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

(S)-1-pyrroline-5-carboxylate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

diacetyl

glycolaldehyde

phytenal

butan-1-al

formaldehyde

acetaldehyde

1-propanal

isobutanal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CMP-3-deoxy-β-D-manno-octulosonate

CDP-4-dehydro-6-deoxy-α-D-glucose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

GDP-α-D-mannose

GDP-α-D-mannuronate

GDP-α-D-perosamine

GDP-4-dehydro-α-D-rhamnose

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

sucrose

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid A

L-gulonate

aldehydo-L-galactonate

3'-dephospho-CoA

(+)-7-epi-jasmonoyl-CoA

succinyl-CoA

acetyl-CoA

malonyl-CoA

acetoacetyl-CoA

propanoyl-CoA

palmitoyl-CoA

L-galactono-1,4-lactone

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

toluene

4-hydroxybenzoate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

cyclic pyranopterin phosphate

6-(hydroxymethyl)-7,8-dihydropterin

molybdopterin adenine dinucleotide

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

adenine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

dAMP

dGMP

dATP

dGTP

dGDP

dADP

GTP

ATP

GDP

ADP

AMP

IMP

XMP

GMP

dTDP

dTTP

dTMP

dCTP

dUTP

dUMP

UTP

CTP

dUDP

UDP

dCDP

CDP

cytidine

uridine

CMP

UMP

precorrin-3A

precorrin-3B

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

2-iminobutanoate

2-iminosuccinate