an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

cinnamyl alcohol

sinapyl alcohol

sinapaldehyde

prenyl diphosphate

N-acetylglutamyl-phosphate

lipid A disaccharide (E. coli)

lipid IV_A

nicotinate adenine dinucleotide

oxaloacetate

prephenate

5-(methylsulfanyl)-α-D-ribose

CO₂

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

H₂O

S-ribosyl-L-homocysteine

L-gulono-1,4-lactone

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

1-piperideine 6-carboxylate

L-dehydro-ascorbate

L-xylo-hex-3-ulono-1,4-lactone

α-D-galacturonate 1-phosphate

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

4-maleyl-acetoacetate

urea

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

7-epicholate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

succinate semialdehyde

core oligosaccharide-lipid A (E. coli K-12 core type)

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

2-oleoylglycerol

ammonia

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

isopentenyl diphosphate

3-phosphooxypyruvate

DNA without lesion

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

2-oxopent-4-enoate

hydrogen selenide

2-(α-hydroxyethyl)thiamine diphosphate

glutathionylspermidine

N-(5-phosphoribosyl)-anthranilate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

S-adenosyl 3-(methylsulfanyl)propylamine

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

3-phosphonopyruvate

4'-phosphopantetheine

2-iminoacetate

N⁵-carboxyaminoimidazole ribonucleotide

homogentisate

N-succinyl-L,L-2,6-diaminopimelate

hydrogen peroxide

(S)-4-amino-5-oxopentanoate

ADP-L-glycero-β-D-manno-heptose

5-aminolevulinate

N-acetyl-L-glutamate 5-semialdehyde

acetyl phosphate

glycerone phosphate

thiamine diphosphate

β-nicotinate D-ribonucleotide

5-amino-6-(D-ribitylamino)uracil

quinolinate

imidazole acetol-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

shikimate

3-dehydroshikimate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

α-D-glucosamine 1-phosphate

O-acetyl-L-serine

4-aminobutanoate

4-guanidinobutyramide

β-D-ribosylnicotinate

ADP-D-glycero-β-D-manno-heptose

selenophosphate

dethiobiotin

preuroporphyrinogen

(S)-2-amino-6-oxohexanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

histidinal

pimeloyl-CoA

8-amino-7-oxononanoate

(S)-2-acetolactate

L-canavanine

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

L-histidinol phosphate

histidinol

phosphoenolpyruvate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

(S)-3-methyl-2-oxopentanoate

(R)-pantothenate

orotidine 5'-phosphate

oxalosuccinate

1-deoxy-L-glycero-tetrulose 4-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

3-deoxy-D-manno-octulosonate 8-phosphate

carboxynorspermidine

norspermidine

4-fumaryl-acetoacetate

acetoacetate

carbonic acid

D-erythro-imidazole-glycerol-phosphate

β-L-arabinose 1-phosphate

31-O-desmethylFK-506

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

FK-506

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(S)-dihydroorotate

anthranilate

4-amino-4-deoxychorismate

coproporphyrinogen III

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

porphobilinogen

3-deoxy-α-D-manno-2-octulosonate

4-pyridoxolactone

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

citrate

carbon monoxide

autoinducer 2

H₂

2-dehydropantoate

2-C-methyl-D-erythritol 4-phosphate

γ-L-glutamyl 5-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

lipid X

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

glycolate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

coniferyl alcohol

coniferaldehyde

carbamoyl phosphate

4-coumaraldehyde

(2E,6E)-farnesyl diphosphate

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3-dehydrocholate

isocholate

glycocholate

cholate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(S)-1-pyrroline-5-carboxylate

adenine

dAMP

dGMP

dGTP

dATP

dITP

dGDP

dADP

dIDP

ATP

ITP

GTP

ADP

IDP

GDP

IMP

XMP

GMP

AMP

2'-deoxyadenosine

2'-deoxyguanosine

xanthosine

guanosine

inosine

adenosine

riboflavin

FMN

FAD

reduced riboflavin

FMNH₂

FADH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

7,8-dihydrofolate monoglutamate

preQ₁

dTDP

dTTP

CDP

CTP

dUDP

dUTP

dCDP

dCTP

UDP

UTP

CMP-N-acetyl-β-neuraminate

dCMP

dUMP

orotate

dTMP

cytidine

uridine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-β-L-arabinopyranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UMP

CMP

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

NAD⁺

NADP⁺

NADH

NADPH

GDP-α-D-mannose

GDP-α-D-mannuronate

GDP-4-dehydro-α-D-rhamnose

CMP-3-deoxy-β-D-manno-octulosonate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

3-phospho-L-serine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

L-phenylalanine

glycine

L-methionine

L-selenocysteine

L-tryptophan

L-leucine

L-cysteine

L-proline

L-alanine

L-isoleucine

L-valine

L-threonine

L-cystathionine

L,L-diaminopimelate

L-serine

L-arginine

L-lysine

L-histidine

L-aspartate

L-tyrosine

L-glutamine

L-glutamate

L-asparagine

L-ornithine

L-citrulline

L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

1-aminocyclopropane-1-carboxylate

L-aspartate 4-semialdehyde

L-canaline

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-homocysteine

meso-diaminopimelate

β-alanine

D-glutamate

D-alanine

hydrogen cyanide

DNA with lesion

phosphonoacetaldehyde

protoheme

N-acetyl-β-neuraminate 9-phosphate

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

2-octaprenylphenol

(2R)-2,3-dihydroxy-3-methylbutanoate

N-acetyl-D-mannosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

superoxide

monodehydroascorbate radical

5,10-methenyltetrahydrofolate mono-L-glutamate

preQ₀

(indole-3-yl)acetonitrile

coenzyme A

(S)-NADHX

(R)-NADHX

demethylmenaquinol-8

ubiquinol-8

menaquinol-8

3-demethylubiquinol-8

L-ascorbate

4-pyridoxate

pyridoxamine

pyridoxine

pyridoxal 5'-phosphate

pyridoxal

pyridoxine 5'-phosphate

N-acetyl-β-neuraminate

acetate

pyruvate

formate

propanoate

(R)-lactate

(2R,3S)-2-methylisocitrate

chorismate

succinate

fumarate

(S)-malate

2-oxobutanoate

2-oxoglutarate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-aminobenzoate

(R)-pantoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

stearate

palmitate

oleate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

diacetyl

glycolaldehyde

3-(N-morpholino)propanal

formaldehyde

butan-1-al

acetaldehyde

cinnamaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

geranial

trimethyl sulfonium

sulfate

sulfite

selenide

thiosulfate

hydrogensulfite

hydrogencarbonate

molybdate

phosphate

diphosphate

ammonium

H⁺

Cd²⁺

Mo²⁺

Ni²⁺

Cu²⁺

Fe²⁺

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

sucrose 6^F-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

sucrose

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

L-gulonate

aldehydo-L-galactonate

dimethyl sulfide

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

methanesulfonate

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

thiocyanate

methanethiol

4-methylphenol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

(+)-7-epi-jasmonoyl-CoA

3'-dephospho-CoA

malonyl-CoA

acetyl-CoA

trans-caffeoyl-CoA

trans-feruloyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

succinyl-CoA

oleoyl-CoA

acetoacetyl-CoA

propanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

L-galactono-1,4-lactone

geranyl diphosphate

neral

geraniol

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-18:1-2-18:1-phosphatidylethanolamine

dioleoyl phosphatidate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

1-palmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

4-hydroxybenzoate

4-coumaryl alcohol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

catechol

ethanol

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine