an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

1-piperideine 6-carboxylate

L-dehydro-ascorbate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

α-D-galacturonate 1-phosphate

selenodiglutathione

glutathioselenol

glutathione disulfide

3'-phosphoadenylyl-sulfate

2-iminoacetate

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

N²-succinylglutamate

N²-succinyl-L-arginine

2-amino-3-carboxymuconate-6-semialdehyde

7-epicholate

succinate semialdehyde

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(R)-4'-phosphopantothenoyl-L-cysteine

core oligosaccharide-lipid A (E. coli K-12 core type)

(R)-4'-phosphopantothenate

2-(α-hydroxyethyl)thiamine diphosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

acetoacetate

carbon monoxide

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

lipid X

(R)-pantothenate

4'-phosphopantetheine

acetyl phosphate

selenophosphate

α-D-glucosamine 1-phosphate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

2-oxopent-4-enoate

5-enolpyruvoyl-shikimate 3-phosphate

3-phosphooxypyruvate

ADP-L-glycero-β-D-manno-heptose

shikimate

shikimate 3-phosphate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

N-(5-phosphoribosyl)-anthranilate

anthranilate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

(S)-dihydroorotate

ammonia

quinolinate

thiamine diphosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

S-ribosyl-L-homocysteine

autoinducer 2

3-dehydroquinate

3-dehydroshikimate

L-canavanine

urea

dithioerythritol

4,5-cis-dihydroxy-1,2-dithiacyclohexane

4-pyridoxolactone

2-oleoylglycerol

D-erythro-imidazole-glycerol-phosphate

4-guanidinobutyramide

prenyl diphosphate

5-amino-6-(D-ribitylamino)uracil

3-deoxy-D-manno-octulosonate 8-phosphate

2-C-methyl-D-erythritol 4-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

porphobilinogen

histidinal

histidinol

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

1-deoxy-L-glycero-tetrulose 4-phosphate

carboxynorspermidine

norspermidine

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

glycerone phosphate

prephenate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

DNA without lesion

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

orotidine 5'-phosphate

(2S)-2-isopropylmalate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

coniferyl alcohol

coniferaldehyde

4-coumaraldehyde

cinnamyl alcohol

sinapyl alcohol

sinapaldehyde

2-keto-D-gluconate

2,5-didehydro-D-gluconate

dethiobiotin

pimeloyl-CoA

oxalosuccinate

L-arginino-succinate

canavaninosuccinate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

8-amino-7-oxononanoate

(S)-2-amino-6-oxohexanoate

7,8-diaminopelargonate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

glycolate

hydrogen peroxide

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

lipid A disaccharide (E. coli)

lipid IV_A

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-carbamoylputrescine

3-methyl-2-oxobutanoate

2-dehydropantoate

imidazole acetol-phosphate

L-histidinol phosphate

glutathionylspermidine

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

nicotinate adenine dinucleotide

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

coproporphyrinogen III

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

3-deoxy-α-D-manno-2-octulosonate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

isopentenyl diphosphate

CO₂

4-aminobutanoate

H₂

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

γ-L-glutamyl 5-phosphate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

carbamoyl phosphate

N-succinyl-L,L-2,6-diaminopimelate

oxaloacetate

preuroporphyrinogen

citrate

hydrogen selenide

O-acetyl-L-serine

H₂O

(2E,6E)-farnesyl diphosphate

DNA with lesion

protoheme

N₂

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

oxygen

hydrogen sulfide

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

N-acetyl-D-mannosamine 6-phosphate

N-acetyl-β-neuraminate 9-phosphate

CMP-N-acetyl-β-neuraminate

superoxide

monodehydroascorbate radical

nitric oxide

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol

preQ₀

(indole-3-yl)acetonitrile

molybdopterin

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

7,8-dihydrofolate monoglutamate

FADH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADP⁺

NAD⁺

NADPH

NADH

nicotinamide

nicotinate

L-ascorbate

riboflavin

4-pyridoxate

pyridoxine

pyridoxamine

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

nitrite

hydrogensulfite

hydrogencarbonate

molybdate

phosphate

triphosphate

diphosphate

Fe²⁺

Zn²⁺

Mo²⁺

H⁺

ammonium

4-methylphenol

L-homocysteine

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

methanethiol

thiophenol

thiobenzoate

furfuryl thiol

S-sulfanylglutathione

thioanisole

(S)-methyl thiobenzoate

furfuryl methyl sulfide

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

neral

geraniol

(3R)-linalool

(3S)-linalool

ethanol

methanol

protocatechuate

2,3-dihydroxybenzoate

catechol

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3-dehydrocholate

isocholate

glycocholate

cholate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

N-acetyl-β-neuraminate

L-serine

β-alanine

L-glutamate

D-glutamate

L-arginine

L-histidine

L-lysine

L-leucine

L-proline

glycine

L-glutamine

L-alanine

L-aspartate

L-cysteine

L-tyrosine

L-asparagine

L-threonine

L-phenylalanine

L-tryptophan

D-alanine

L-aspartyl-4-phosphate

3-phospho-L-serine

N-carbamoyl-L-aspartate

N-acetyl-L-glutamate

O-acetyl-L-homoserine

L-isoleucine

L-valine

L-methionine

L-selenocysteine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-citrulline

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-canaline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

meso-diaminopimelate

chorismate

succinate

fumarate

(S)-malate

(R)-lactate

acetate

pyruvate

formate

propanoate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxobutanoate

glyoxylate

2-oxoglutarate

4-aminobenzoate

palmitate

stearate

(R)-pantoate

orotate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

(S)-1-pyrroline-5-carboxylate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

diacetyl

cinnamaldehyde

glycolaldehyde

formaldehyde

acetaldehyde

(S)-lactaldehyde

geranial

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CMP-3-deoxy-β-D-manno-octulosonate

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-4-dehydro-6-deoxy-β-L-galactose

GDP-α-D-mannose

GDP-α-D-mannuronate

GDP-β-L-fucose

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-fuculose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

sucrose

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

α-Kdo-(2→6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

L-gulonate

aldehydo-L-galactonate

succinyl-CoA

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

(+)-7-epi-jasmonoyl-CoA

acetyl-CoA

acetoacetyl-CoA

propanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

L-galactono-1,4-lactone

phlorisovalerophenone

4-prenylphlorisovalerophenone

deoxyhumulone

deoxycohumulone

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

4-coumaryl alcohol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

adenine

2'-deoxyadenosine

2'-deoxyguanosine

xanthosine

guanosine

inosine

adenosine

dAMP

dGMP

dGTP

dATP

dITP

dIDP

dGDP

dADP

ITP

GTP

ATP

IDP

GDP

ADP

AMP

XMP

GMP

IMP

dCMP

dTDP

dTTP

dUTP

dCTP

dTMP

dUMP

UTP

CTP

dUDP

UDP

dCDP

CDP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

CMP

UMP

preQ₁

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

2-iminosuccinate

2-iminobutanoate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

D-alanyl-D-alanine