an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-dehydro-ascorbate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

α-D-galacturonate 1-phosphate

quinolinate

propanoyl phosphate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

5-aminopentanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

creatinine

mercuriphenyl acetate

2-iminoacetate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

N⁵-carboxyaminoimidazole ribonucleotide

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

4-amino-2-methyl-5-pyrimidinemethanol

ammonia

S-methyl-5'-thioadenosine

2-(α-hydroxyethyl)thiamine diphosphate

oxalosuccinate

carbon monoxide

DNA without lesion

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

squalene

presqualene diphosphate

prephytoene diphosphate

hydroxylamine

coproporphyrinogen III

ADP-L-glycero-β-D-manno-heptose

formamide

carbonic acid

4-fumaryl-acetoacetate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(lipoyl)adenylate

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

N-acetylglutamyl-phosphate

L-canavanine

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-(methylsulfanyl)-ribulose 1-phosphate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

3-keto-β-D-galactose

lipid IV_A

pseudouridine

N-acetyl-L-glutamate 5-semialdehyde

(S)-2,3,4,5-tetrahydrodipicolinate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

citrate

hydrogen selenide

O-acetyl-L-serine

L-arogenate

shikimate 3-phosphate

lipid X

lipid A disaccharide (E. coli)

CDP-glycerol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

ethanolamine

phosphocholine

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

thiamine phosphate

histidinal

histidinol

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

cyclohex-1,5-diene-1-carbonyl-CoA

selenophosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

β-D-ribosylnicotinate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-enolpyruvoyl-shikimate 3-phosphate

methylsalicylate

salicyl alcohol

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

enol-phenylpyruvate

5-hydroxyindole thiazolidine carboxylate

dehydroascorbate (bicyclic form)

pyruvic oxime

prenyl diphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

shikimate

3-dehydroshikimate

S-Inosyl-L-homocysteine

prephenate

thiamine diphosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

hydrogen peroxide

(R)-2,3-dihydroxy-3-methylpentanoate

pseudouridine 5'-phosphate

α-D-glucosamine 1-phosphate

γ-L-glutamyl 5-phosphate

phosphoenolpyruvate

oxalate

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

acetoacetate

L-β-lysine

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

H₂

orotidine 5'-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

arsenite

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

oxaloacetate

β-nicotinate D-ribonucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

xanthine

isopentenyl diphosphate

nicotinate adenine dinucleotide

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

tartronate semialdehyde

dihydroxyacetone

carbamoyl phosphate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

2-oleoylglycerol

N-acetyl-L,L-2,6-diaminopimelate

(S)-dihydroorotate

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

glycolate

N-methylhydantoin

glycerone phosphate

hydroxypyruvate

3-phosphooxypyruvate

(R)-pantothenate

(R)-4'-phosphopantothenate

H₂O

acetyl phosphate

DNA with lesion

phenylacetate

ethylphosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

protoheme

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

Hg⁰

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

(R)-citramalate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

monodehydroascorbate radical

dimethyl sulfide

S-(hydroxymethyl)glutathione

methionol

3-(methylsulfanyl)propanal

thiocyanate

glutathione

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

(R)-S-lactoylglutathione

Fe³⁺

ammonium

H⁺

Hg²⁺

Fe²⁺

Cu²⁺

Cd²⁺

trimethyl sulfonium

sulfite

selenide

sulfate

hydrogensulfite

nitrite

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

4-methylphenol

L-homocysteine

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

choline

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

acetamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

isobutanoyl-CoA

phenylacetyl-CoA

2-methylbutanoyl-CoA

4-hydroxybutanoyl-CoA

benzoyl-CoA

3'-dephospho-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

formyl-CoA

oxalyl-CoA

(S)-3-aminobutanoyl-CoA

2-methylacetoacetyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

CoA-disulfide

succinyl-CoA

malonyl-CoA

acetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

1-oleoyl-sn-glycerol

FMNH₂

FMN

FAD

FADH₂

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

(R)-lipoate

coenzyme A

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

5-formyl-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

nicotinate

thiamine

riboflavin

L-ascorbate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

adenine

guanine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

purine

hypoxanthine

dGTP

dATP

dGDP

dADP

GDP

ADP

XMP

IMP

GMP

AMP

GTP

ATP

CDP-choline

dTTP

dUMP

dCMP

dUDP

UDP

dCDP

CDP

CTP

UTP

dCTP

dUTP

orotate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

uracil

dTMP

dTDP

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-quinovosamine

UDP-N-acetyl-α-D-fucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

CDP-4-dehydro-6-deoxy-α-D-glucose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

coumarin

scopoletin

4-methylumbelliferone

preQ₀

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

(indole-3-yl)acetonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

benzene

6,8-dihydroxypurine

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

coumarinate

salicylate

4-aminobenzoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

chorismate

L-aspartate

fumarate

succinate

(S)-malate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

4-hydroxybutanoate

(R)-lactate

(S)-lactate

propanoate

acetate

pyruvate

formate

butanoate

decanoate

octanoate

(15Z)-tetracosenoate

oleate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

palmitate

pristanate

leukotriene-D4

leukotriene-E4

D-mannonate

D-gluconate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxoglutarate

glyoxylate

2-oxobutanoate

L-α-amino-ε-keto-pimelate

L-serine

N-carbamoylsarcosine

β-alanine

(S)-3-amino-2-methylpropanoate

L-proline

L-glutamine

L-leucine

glycine

L-alanine

D-glutamate

L-glutamate

L-arginine

L-histidine

L-lysine

L-asparagine

L-tyrosine

L-cysteine

L-threonine

L-tryptophan

L-phenylalanine

D-proline

D-aspartate

D-alanine

D-ornithine

L-aspartyl-4-phosphate

3-phospho-L-serine

sarcosine

N-formimino-glycine

L-2-acetamido-6-oxoheptanedioate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-citrulline

L-valine

L-isoleucine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

L-homoserine

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

L,L-diaminopimelate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

butan-1-al

formaldehyde

isobutanal

1-propanal

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

methanol

propan-1-ol

ethanol

phytol

glycerol

L-iditol

D-sorbitol

galactitol

D-sorbitol 6-phosphate

(3R)-linalool

(3S)-linalool

(S)-propane-1,2-diol

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

15-cis-phytoene

all-trans-phytoene

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

raffinose

maltotriose

stachyose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

α-maltose

melibiose

sucrose

α,α-trehalose

α-lactose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

keto-L-sorbose

keto-D-fructose

β-D-fructofuranose

D-xylulose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

keto-L-sorbose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-gulonate

aldehydo-L-galactonate

D-altronate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

5'-deoxyadenosine

(R)-NADPHX

(S)-NADPHX

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

2-iminosuccinate

2-iminobutanoate