an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

carbon monoxide

acetoacetate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-acetyl-L,L-2,6-diaminopimelate

oxalosuccinate

H₂

citrate

4-acetamidobutanal

4-acetamidobutanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

(L-threonylcarbamoyl)adenylate

DNA without lesion

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

CDP-glycerol

1,6-anhydro-N-acetyl-β-muramate

ethanolamine

α-D-galactosyl-diphosphoundecaprenol

N,N-dimethyl-1,4-phenylenediamine

3-methylbenzyl alcohol

3-methylbenzaldehyde

4-methylbenzyl alcohol

4-(γ-L-glutamylamino)butanoate

4-aminobutanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

β-D-ribosylnicotinate

6-phospho D-glucono-1,5-lactone

(R)-pantothenate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-methylcytosine

D-gluconate 6-phosphate

α-D-glucosamine 1-phosphate

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

2-phenylethanol

3-methylbutanol

3-methylbutanal

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

isobutanol

2-methylbutanol

2-methylbutanal

indole-3-glycol

indole-3-glycol aldehyde

phosphoenolpyruvate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

thiamine diphosphate

poly (glycerol phosphate)

o-(α-D-glucosyl)-polyglycerol phosphate

arsenite

(S)-dihydroorotate

carbamoyl phosphate

orotidine 5'-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

glycerone phosphate

pseudouridine 5'-phosphate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(4-hydroxyphenyl)acetate

3-phosphooxypyruvate

glycolate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

salicyl alcohol

xanthine

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

hydrogen peroxide

(S)-2,3,4,5-tetrahydrodipicolinate

oxaloacetate

acetyl phosphate

(R)-mevalonate

CO₂

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

isopentenyl diphosphate

prenyl diphosphate

H₂O

2-amino-3-carboxymuconate-6-semialdehyde

ammonia

2-iminoacetate

autoinducer 2

pseudouridine

L-arginino-succinate

4-amino-2-methyl-5-pyrimidinemethanol

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

5-amino-6-(5-phospho-D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

quinolinate

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

anthranilate

N-(5-phosphoribosyl)-anthranilate

(2E,6E)-farnesyl diphosphate

hydrogen cyanide

coenzyme A

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NAD⁺

NADP⁺

NADH

NADPH

thiamine

riboflavin

nicotinamide

nicotinate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

pyridoxine

pyridoxamine

all-trans-retinal

trimethyl sulfonium

sulfite

thiosulfate

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

phosphonate

phosphate

triphosphate

diphosphate

Fe²⁺

Co²⁺

Mg²⁺

Cd²⁺

Cu²⁺

ammonium

H⁺

Na⁺

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

thiocyanate

aniline

2-iminopropanoate

2-aminoprop-2-enoate

spermidine

putrescine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

benzyl alcohol

glycerol

D-mannitol 1-phosphate

(3R)-linalool

(3S)-linalool

butan-1-ol

propan-1-ol

ethanol

methanol

phytol

hydroquinone

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

glycocholate

cholate

3-dehydrocholate

isocholate

(+)-7-epi-jasmonate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

L-α-amino-ε-keto-pimelate

L-cysteine

L-serine

L-glutamine

L-threonine

L-tyrosine

L-asparagine

glycine

L-aspartate

L-glutamate

L-histidine

L-arginine

L-lysine

L-tryptophan

L-phenylalanine

D-methionine

D-aspartate

D-alanine

D-glutamate

L-aspartyl-4-phosphate

N-formimino-glycine

N-carbamoyl-L-aspartate

L-2-acetamido-6-oxoheptanedioate

3-phospho-L-serine

L-alanine

L-leucine

L-valine

L-isoleucine

L-methionine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-citrulline

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

salicylate

benzoate

4-methylbenzoate

cis-aconitate

D-threo-isocitrate

butanoate

stearate

palmitate

octanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

sophorosyloxydocosanoate

phytenate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

acetate

D-gluconate

orotate

chorismate

succinate

fumarate

(S)-malate

(S)-lactate

(R)-lactate

pyruvate

formate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

salicylaldehyde

4-methylbenzaldehyde

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

D-glyceraldehyde

β-D-galactopyranose

α-D-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

phytenal

butan-1-al

1-octanal

acetaldehyde

isobutanal

1-propanal

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

GDP-α-D-mannose

ADP-α-D-glucose

ADP-D-ribose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

methyl β-D-glucoside 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

arbutin-6-phosphate

salicin 6-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-β-D-glucosamine

maltotetraose

maltotriose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

sucrose

dihomo γ-linolenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

acetyl-CoA

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

crotonyl-CoA

oleoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

D-glucono-1,5-lactone

tributyrin

1,2-dibutyrin

apo-4'-lycopenal

15,15'-dihydroxy-β-carotene

β-carotene

β-carotene 15,15' epoxide

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

urate

4-tyrosol

8-hydroxypurine

6,8-dihydroxypurine

parathion

3-methoxy-4-hydroxyphenylglycol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-methylphenol

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

adenine

guanine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

adenosine

inosine

xanthosine

guanosine

hypoxanthine

purine

dAMP

dGMP

dGTP

dATP

dADP

dGDP

GTP

ATP

GDP

ADP

XMP

AMP

IMP

GMP

adenosylcobalamin

cob(I)alamin

precorrin-1

precorrin-2

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

sirohydrochlorin

cobyrinate

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

dTTP

cytidine-3'-monophosphate

uridine 3'-monophosphate

dUDP

dCDP

CDP

cytosine

dCMP

dUMP

dTMP

dTDP

uracil

UDP

dCTP

dUTP

UTP

CTP

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

5-fluorouracil

thymine

UMP

CMP

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 3'-monophosphate

cyclic-AMP

ppGpp

pppGpp

adenylo-succinate

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

5-fluorocytosine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

5,10-methenyltetrahydrofolate mono-L-glutamate

DNA with lesion

ethylphosphate

cob(II)yrinate a,c-diamide

adenosylcobyrate

cob(I)inamide

adenosylcobinamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cobalt-factor III

cobalt-sirohydrochlorin

uroporphyrinogen-III

siroheme

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

α-D-glucosamine 6-phosphate

2-iminosuccinate