an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

1,4-dihydroxy-2-naphthoate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

6-phospho D-glucono-1,5-lactone

oxalate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

autoinducer 2

(R)-pantothenate

acetoacetate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

hexulose 6-phosphate

3-keto-L-gulonate 6-phosphate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

xanthine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

ethanolamine

CDP-glycerol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

thiamine diphosphate

(S)-dihydroorotate

orotidine 5'-phosphate

N-succinyl-L,L-2,6-diaminopimelate

3-keto-β-D-galactose

arsenite

carbamoyl phosphate

pyrazine-2-carboxylate

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

isopentenyl diphosphate

prenyl diphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-amino-4-deoxychorismate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

indole-3-ethanol

D-gluconate 6-phosphate

hydrogen peroxide

3-carboxy-2,5-dihydro-5-oxofuran-2-acetate

4-pyridoxolactone

glycerone phosphate

α-D-glucosamine 1-phosphate

acetyl phosphate

H₂

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

salicyl alcohol

scopolin

4-hydroxybenzaldehyde

cis-coumarinic acid-β-D-glucoside

4-methylumbelliferyl glucoside

phosphoenolpyruvate

nigerose

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

indole-3-glycol

indole-3-glycol aldehyde

2-methylbutanol

2-methylbutanal

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

3-methylbutanol

3-methylbutanal

2-phenylethanol

oxaloacetate

citrate

4'-phosphopantetheine

CO₂

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

glycolate

DNA without lesion

H₂O

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

ammonia

2-amino-3-carboxymuconate-6-semialdehyde

(4-hydroxyphenyl)acetate

urea

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

hydroxypyruvate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

quinolinate

L-arginino-succinate

3-methyl-2-oxobutanoate

carbon monoxide

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

4-amino-2-methyl-5-pyrimidinemethanol

thiamine phosphate

2-iminoacetate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N-acetyl-D-muramate 6-phosphate

oxalosuccinate

3,4-dihydroxyphenylacetaldehyde

prop-2-ynal

propynoate

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

imidazole acetaldehyde

4-imidazoleacetate

5-hydroxyindole acetate

D-glucurono-6,3-lactone

(2E,6E)-farnesol

(2E,6E)-farnesyl diphosphate

oxygen

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

trimethyl sulfonium

sulfite

selenide

thiosulfate

hydrogensulfite

hydrogencarbonate

phosphonate

phosphate

triphosphate

diphosphate

ammonium

H⁺

Zn²⁺

Co²⁺

Cd²⁺

Mg²⁺

L-homocysteine

4-methylphenol

S-methyl-L-methionine

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

thiocyanate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

putrescine

spermidine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

glycyl-L-glutamine

glycyl-L-aspartate

L-alanyl-L-glutamine

L-alanyl-L-leucine

glycyl-L-asparagine

L-alanyl-L-aspartate

L-alanyl-L-histidine

L-alanyl-L-glutamate

glycyl-L-glutamate

L-cysteinylglycine

glycyl-L-proline

glycyl-L-methionine

L-alanyl-glycine

L-alanyl-L-threonine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-alanyl-D-glutamate

D-alanyl-D-alanine

L-methionyl-L-alanine dipeptide

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerol

L-arabinitol

D-mannitol 1-phosphate

galactitol

D-mannitol

(3R)-linalool

(3S)-linalool

methanol

propan-1-ol

ethanol

butan-1-ol

phytol

myo-inositol

D-ononitol

D-galactosylononitol

galactinol

hydroquinone

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

protocatechuate

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

glycocholate

cholate

3-dehydrocholate

isocholate

(indol-3-yl)acetate

5-amino-4-imidazolecarboxyamide

pyrazinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

N-acetyl-β-neuraminate

L-tyrosine

L-cysteine

L-serine

L-threonine

L-asparagine

L-glutamine

glycine

L-glutamate

L-aspartate

L-arginine

L-lysine

L-histidine

L-phenylalanine

D-aspartate

D-alanine

D-glutamate

L-aspartyl-4-phosphate

N-formimino-glycine

N-carbamoyl-L-aspartate

N-formyl-L-methionine

L-leucine

L-proline

L-valine

L-selenocysteine

L-alanine

L-methionine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-citrulline

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

butanoate

octanoate

(2E,6E)-farnesoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

sophorosyloxydocosanoate

phytenate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

acetate

D-gluconate

orotate

aldehydo-D-glucuronate

chorismate

D-glucarate

succinate

fumarate

(S)-malate

(R)-lactate

(S)-lactate

pyruvate

formate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

4-aminobenzoate

benzoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

(2E,6E)-farnesal

D-glyceraldehyde

L-glyceraldehyde

aldehydo-D-mannose

β-D-mannopyranose

α-D-galactopyranose

β-D-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

phytenal

formaldehyde

acetaldehyde

1-propanal

isobutanal

butan-1-al

1-octanal

(S)-lactaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

1-O-acetyl-α-maltose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

GDP-α-D-glucose

GDP-α-D-mannose

ADP-D-ribose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

α-lactose 6'-phosphate

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

methyl β-D-glucoside 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

lotaustralin

salicin 6-phosphate

arbutin-6-phosphate

neolinustatin

linustatin

linamarin

taxiphyllin

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

L-ascorbate 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-fructofuranose

keto-D-fructose

N-acetyl-β-D-mannosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

stachyose

maltotetraose

raffinose

maltotriose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

melibiose

sucrose

allolactose

α-lactose

β-D-cellobiose

1-kestotriose

L-gulonate

D-glucono-1,5-lactone

formyl-CoA

oxalyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

acetyl-CoA

3'-dephospho-CoA

crotonyl-CoA

(S)-malyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

phlorisovalerophenone

geranyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

4-prenylphlorisovalerophenone

deoxyhumulone

deoxycohumulone

betanidin

betanidin quinone

4-methylumbelliferone

scopoletin

coumarin

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

4-tyrosol

8-hydroxypurine

6,8-dihydroxypurine

urate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

coumarinate

baicalein

6,7-dehydrobaicalein

(indol-3-yl)acetaldehyde

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

demethylmenaquinol-8

ubiquinol-8

menaquinol-8

3-demethylubiquinol-8

guanine

adenine

hypoxanthine

purine

dGMP

dAMP

dGTP

dATP

dGDP

dADP

ITP

ATP

GTP

IDP

ADP

GDP

IMP

XMP

GMP

AMP

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

inosine

guanosine

xanthosine

FAD

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dTDP

dUTP

uridine 2'-monophosphate

cytidine 2'-monophosphate

uridine 3'-monophosphate

cytidine-3'-monophosphate

dCMP

UTP

dUDP

dCDP

CDP

uracil

UDP

dUMP

dTMP

CTP

dCTP

dTTP

thymine

UMP

CMP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 2'-monophosphate

guanosine 2'-monophosphate

cyclic-AMP

pppGpp

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenylo-succinate

ppGpp

5'-deoxyadenosine

NAD⁺

NADP⁺

NADH

NADPH

β-nicotinamide D-ribonucleotide

5,10-methenyltetrahydrofolate mono-L-glutamate

hydrogen cyanide

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

coenzyme A

(S)-NADHX

(R)-NADHX

DNA with lesion

thiamine

nicotinate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

ethylphosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate