an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-chloro-4-methyl-cis,cis-muconate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methylmuconolactone

1,6-anhydro-N-acetyl-β-muramate

xanthine

(L-threonylcarbamoyl)adenylate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

2-oleoylglycerol

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(1R,2R)-cyclohexa-3,5-diene-1,2-diol

digallate

CDP-glycerol

gallate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

DNA without lesion

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(R)-pantothenate

acrylamide

acrylate

(indol-3-yl)acetamide

4-guanidinobutyramide

4-guanidinobutanoate

propionamide

autoinducer 2

succinate semialdehyde

4-amino-4-deoxychorismate

nicotinate adenine dinucleotide

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

α-D-glucosamine 1-phosphate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-methylcytosine

pseudouridine 5'-phosphate

ethanolamine

S-ribosyl-L-homocysteine

4'-phosphopantetheine

α-D-galactosyl-diphosphoundecaprenol

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

oxalate

2-phenylethanol

3-methylbutanol

3-methylbutanal

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

isobutanol

2-methylbutanol

2-methylbutanal

indole-3-glycol

indole-3-glycol aldehyde

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-dehydro-3-deoxy-D-galactonate

luteolin 7-O-β-D-glucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

tartronate semialdehyde

morphinone

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

prenyl diphosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(S)-dihydroorotate

carbamoyl phosphate

orotidine 5'-phosphate

oxaloacetate

phosphoenolpyruvate

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

thiamine diphosphate

isopentenyl diphosphate

arsenite

hydrogen peroxide

acetyl phosphate

3-keto-β-D-galactose

4-methylumbelliferyl glucoside

cis-coumarinic acid-β-D-glucoside

4-hydroxybenzaldehyde

scopolin

CO₂

salicyl alcohol

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

glycerone phosphate

H₂O

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

L-arginino-succinate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

2-dehydro-3-deoxy-D-galactonate 6-phosphate

pseudouridine

2-iminoacetate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

quinolinate

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-amino-3-carboxymuconate-6-semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

H₂

carbon monoxide

acetoacetate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

4-(γ-L-glutamylamino)butanoate

4-aminobutanoate

glutathione disulfide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

oxalosuccinate

citrate

α-ribazole 5'-phosphate

α-ribazole

3-methyl-2-oxobutanoate

1,4-dihydroxy-2-naphthoate

(2E,6E)-farnesyl diphosphate

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

demethylmenaquinol-11

demethylmenaquinol-9

demethylmenaquinol-8

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-12

demethylmenaquinol-13

menaquinol-11

menaquinol-9

menaquinol-8

menaquinol-10

menaquinol-6

menaquinol-7

menaquinol-12

menaquinol-13

NAD⁺

NADP⁺

NADH

NADPH

nicotinate

riboflavin

thiamine

nicotinamide

pyridoxal

pyridoxine

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

all-trans-retinal

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

L-tyrosine

L-phenylalanine

D-glutamate

D-alanine

D-aspartate

L-valine

L-alanine

L-methionine

glycine

L-leucine

L-cysteine

L-serine

L-lysine

L-threonine

L-aspartyl-4-phosphate

L-asparagine

L-aspartate

L-glutamine

L-glutamate

L-arginine

L-ornithine

N-carbamoyl-L-aspartate

L-citrulline

L-homocysteine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

N-formimino-glycine

butanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

sophorosyloxydocosanoate

acetate

D-gluconate

orotate

β-D-glucuronate

3-methyl-cis,cis-muconate

chorismate

succinate

fumarate

(S)-malate

(S)-lactate

(R)-lactate

(R)-glycerate

pyruvate

formate

propanoate

3-oxoadipate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

D-glyceraldehyde

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

α-D-xylopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

phytenal

acetaldehyde

isobutanal

1-propanal

butan-1-al

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

diacetyl

(R)-acetoin

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

2-iminopropanoate

2-aminoprop-2-enoate

putrescine

spermidine

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

α-D-ribose-1-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

arbutin-6-phosphate

salicin 6-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

GDP-α-D-mannose

GDP-α-D-glucose

ADP-α-D-glucose

ADP-D-ribose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

α-lactose 6'-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

methyl β-D-glucoside 6-phosphate

D-glyceraldehyde 3-phosphate

lotaustralin

taxiphyllin

linustatin

linamarin

neolinustatin

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-β-D-glucosamine

glycerol

isoprimeverose

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

stachyose

maltotetraose

raffinose

maltotriose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

melibiose

sucrose

α-lactose

β-D-cellobiose

6_G-kestotriose

1,6-kestotetraose

1-kestotriose

1,1-kestotetraose

6-kestotriose

6,6-kestotetraose

D-galactonate

isobutanoyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

formyl-CoA

oxalyl-CoA

acetyl-CoA

succinyl-CoA

crotonyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

D-glucono-1,5-lactone

cis-dienelactone

5-chloro-3-methyl-cis-dienelactone

2-chloro-5-methyl-dienelactone

3,5-dichloro-2-methyl-muconolactone

3-chloro-2-methyl-dienelactone

tributyrin

1,2-dibutyrin

cephalosporin C

deacetylcephalosporin C

(3R)-linalool

(3S)-linalool

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

15,15'-dihydroxy-β-carotene

β-carotene

β-carotene 15,15' epoxide

morphine

4-methylumbelliferone

scopoletin

coumarin

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

4-tyrosol

8-hydroxypurine

6,8-dihydroxypurine

urate

hydroquinone

catechol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

4,6-dichloro-3-methylcatechol

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

parathion

3-methoxy-4-hydroxyphenylglycol

coumarinate

luteolin

4-methylphenol

adenine

guanine

hypoxanthine

purine

dGMP

dAMP

dATP

dGTP

dADP

dGDP

GTP

ATP

ADP

GDP

AMP

XMP

GMP

IMP

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

inosine

guanosine

xanthosine

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

dCTP

dUTP

dUDP

cytidine-3'-monophosphate

uridine 3'-monophosphate

dTDP

cytosine

dTTP

dCMP

dCDP

CDP

uracil

dUMP

dTMP

CTP

UDP

UTP

thymine

CMP

UMP

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

5-fluorouracil

adenosylcobalamin

cob(I)alamin

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

cyclic-AMP

5'-deoxyadenosine

guanosine 3'-monophosphate

adenosine 3'-monophosphate

adenylo-succinate

ppGpp

pppGpp

β-nicotinamide D-ribonucleotide

5-fluorocytosine

trimethyl sulfonium

sulfite

thiosulfate

hydrogensulfite

hydrogencarbonate

chloride

phosphonate

phosphate

triphosphate

diphosphate

ammonium

H⁺

Na⁺

K⁺

Cu²⁺

Co²⁺

Cd²⁺

Mg²⁺

Ca²⁺

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

thiocyanate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

DNA with lesion

ethylphosphate

cob(I)inamide

adenosylcobinamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

hydrogen cyanide

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol

2-iminosuccinate

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

ethanol

propan-1-ol

methanol

butan-1-ol

phytol

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

glycocholate

cholate

3-dehydrocholate

isocholate

(indol-3-yl)acetate

3-chloro-cis,cis-muconate

3,5-dichloro-2-methyl-muconate

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-maleylacetate

acetamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

coenzyme A