an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

oxaloacetate

citrate

anthranilate

prenyl diphosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

CO₂

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

hydrogen peroxide

carbamoyl phosphate

glycolate

2-phosphoglycolate

indole-3-glycol aldehyde

indole-3-glycol

2-methylbutanal

2-methylbutanol

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methylbutanal

3-methylbutanol

2-phenylethanol

α-D-galactosyl-diphosphoundecaprenol

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

4'-phosphopantetheine

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

S-ribosyl-L-homocysteine

arsenite

nicotinate adenine dinucleotide

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

pseudouridine 5'-phosphate

ethanolamine

L-selenocystathionine

propionamide

4-guanidinobutanoate

4-guanidinobutyramide

(indol-3-yl)acetamide

acrylate

acrylamide

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

CDP-glycerol

succinate semialdehyde

(R)-pantothenate

N,N-dimethyl-1,4-phenylenediamine

3-dehydroshikimate

3-dehydroquinate

shikimate

salicyl alcohol

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

morphinone

N-succinyl-L,L-2,6-diaminopimelate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

4-aminobutanoate

4-(γ-L-glutamylamino)butanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

DNA without lesion

α-ribazole 5'-phosphate

(L-threonylcarbamoyl)adenylate

α-ribazole

2-oleoylglycerol

4-amino-4-deoxychorismate

oxalate

dialurate

5,6-dimethylbenzimidazole

2-amino-3-carboxymuconate-6-semialdehyde

oxalosuccinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

carbon monoxide

H₂

5-ureidoimidazole-4-carboxylate

5-aminoimidazole-4-carboxylate

4-aminoimidazole

3,5-dihydro-4H-imidazol-4-one

(R)-1-amino-2-propanol O-2-phosphate

coproporphyrinogen III

3-methyl-2-oxobutanoate

1,6-anhydro-N-acetyl-β-muramate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-pyrimidinemethanol

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

quinolinate

L-arginino-succinate

pseudouridine

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

autoinducer 2

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-iminoacetate

H₂O

xanthine

acetyl phosphate

(R)-mevalonate

phosphoenolpyruvate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

glycerone phosphate

α-D-glucosamine 1-phosphate

isopentenyl diphosphate

thiamine diphosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-muramate 6-phosphate

2-iminopropanoate

2-iminosuccinate

L-citrulline

L-aspartate

L-glutamate

L-glutamine

L-asparagine

L-phenylalanine

L-valine

L-threonine

L-arginine

L-serine

L-lysine

L-methionine

L-tyrosine

L-cysteine

L-leucine

glycine

L-alanine

S-adenosyl-L-homocysteine

L-ornithine

L-homocysteine

L-cystine

S-adenosyl-L-methionine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-cystathionine

L,L-diaminopimelate

seleno-L-homocysteine

N-formimino-glycine

D-glutamate

D-aspartate

D-alanine

dGDP

dGTP

dADP

dATP

ITP

IDP

dITP

dIDP

dGMP

2'-deoxyguanosine

dAMP

adenylo-succinate

5'-deoxyadenosine

AMP

ATP

XMP

IMP

2'-deoxyinosine

2'-deoxyadenosine

ADP

GDP

GTP

hypoxanthine

GMP

cyclic-AMP

pppGpp

ppGpp

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

purine

guanine

adenine

uracil

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

dCDP

dUDP

dTDP

dTTP

dUTP

dCTP

dCMP

dTMP

dUMP

β-nicotinamide D-ribonucleotide

UMP

CMP

CDP

UDP

UTP

CTP

NADH

NADPH

NAD⁺

NADP⁺

uridine 3'-monophosphate

cytidine-3'-monophosphate

UDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

ADP-D-ribose

GDP-α-D-mannose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

xanthosine

guanosine

inosine

adenosine

2'-deoxyuridine

2'-deoxycytidine

thymidine

uridine

cytidine

7,8-dihydrolumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FMNH₂

reduced riboflavin

FAD

FMN

riboflavin

adenosylcobalamin

4-tyrosol

urate

6,8-dihydroxypurine

8-hydroxypurine

hydroquinone

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

protocatechuate

aniline

4-methylphenol

4-aminobenzoate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

3-methoxy-4-hydroxyphenylglycol

all-trans-retinal

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

β-carotene 15,15' epoxide

β-carotene

15,15'-dihydroxy-β-carotene

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1,2-dibutyrin

tributyrin

morphine

(3S)-citryl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

malonyl-CoA

succinyl-CoA

formyl-CoA

oxalyl-CoA

acetyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

oleoyl-CoA

butanoyl-CoA

propanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

crotonyl-CoA

1-(β-D ribofuranosyl)nicotinamide

maltotriose

6,6-kestotetraose

6-kestotriose

6_G-kestotriose

1-kestotriose

1,1-kestotetraose

1,6-kestotetraose

sucrose

melibiose

α-maltose

maltopentaose

maltohexaose

maltoheptaose

maltotetraose

raffinose

stachyose

aldehydo-D-ribose

β-D-ribopyranose

β-D-ribofuranose

α-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

D-glyceraldehyde

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycerol

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

α-D-ribose-1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

methyl β-D-glucoside 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

sucrose 6^F-phosphate

α-lactose 6'-phosphate

β-D-cellobiose 6'-phosphate

1-propanal

isobutanal

acetaldehyde

butan-1-al

phytenal

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

cis-aconitate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

acetate

butanoate

2-oxoglutarate

glyoxylate

pyruvate

3-phenyl-2-oxopropanoate

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

(R)-glycerate

chorismate

succinate

fumarate

(S)-malate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

nicotinamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

acetamide

(indol-3-yl)acetate

propan-1-ol

phytol

ethanol

butan-1-ol

methanol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

spermidine

putrescine

2-aminoprop-2-enoate

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

thiocyanate

3-sulfopyruvate

L-cysteate

5-(2-hydroxyethyl)-4-methylthiazole

hydrogencarbonate

sulfite

thiosulfate

nitrate

nitrite

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

Cd²⁺

Mg²⁺

Fe²⁺

Cu²⁺

ammonium

H⁺

Na⁺

K⁺

trimethyl sulfonium

nicotinate

thiamine

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine

pyridoxal

pyridoxamine

(R)-NADHX

(S)-NADHX

coenzyme A

hydrogen cyanide

5,10-methenyltetrahydrofolate mono-L-glutamate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

4-dimethylaminophenylazobenzene

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

(Z,Z)-biliverdin-IX α

(Z,Z)-bilirubin-IX α

protoheme

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cob(II)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobyrate

ethylphosphate

DNA with lesion

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

D-alanyl-D-alanine