an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

hydrogen peroxide

CO₂

acetyl phosphate

D-gluconate 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

glycerone phosphate

N-acetyl-D-muramate 6-phosphate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

ethanolamine

(R)-4'-phosphopantothenate

(R)-pantothenate

salicyl alcohol

(4-hydroxyphenyl)acetate

autoinducer 2

S-ribosyl-L-homocysteine

2,5-didehydro-D-gluconate

2-keto-D-gluconate

succinate semialdehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol aldehyde

indole-3-glycol

isobutanol

3-methylbutanal

3-methylbutanol

2-methylbutanal

2-methylbutanol

2-phenylethanol

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

nicotinate adenine dinucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

β-nicotinate D-ribonucleotide

(R)-mevalonate

phosphoenolpyruvate

α-D-glucosamine 1-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

pseudouridine 5'-phosphate

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

xanthine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

N-acetyl-L,L-2,6-diaminopimelate

carbamoyl phosphate

isopentenyl diphosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

prenyl diphosphate

(S)-dihydroorotate

orotidine 5'-phosphate

oxaloacetate

glutathione disulfide

DNA without lesion

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-prenylphlorisobutyrophenone

(indol-3-yl)pyruvate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

indole-3-lactate

acetoacetate

N-succinyl-L,L-2,6-diaminopimelate

carbon monoxide

1,6-anhydro-N-acetyl-β-muramate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

2-iminoacetate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-methyl-2-oxobutanoate

pseudouridine

4'-phosphopantetheine

quinolinate

2-amino-3-carboxymuconate-6-semialdehyde

CDP-glycerol

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-pyrimidinemethanol

L-arginino-succinate

(2E,6E)-farnesyl diphosphate

L-homocysteine

4-methylphenol

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-α-amino-ε-keto-pimelate

L-alanine

L-phenylalanine

L-methionine

glycine

L-tryptophan

L-leucine

L-valine

L-cysteine

L-ornithine

L-asparagine

L-aspartate

L-serine

L-glutamate

L-glutamine

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-histidine

L-lysine

L-arginine

L-tyrosine

N-carbamoyl-L-aspartate

L-citrulline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

meso-diaminopimelate

D-alanine

D-glutamate

D-aspartate

2-iminopropanoate

2-iminosuccinate

ADP

ATP

dGMP

2'-deoxyguanosine

AMP

dADP

GDP

dGDP

GMP

GTP

ppGpp

pppGpp

hypoxanthine

IMP

adenylo-succinate

XMP

5'-deoxyadenosine

dATP

dGTP

2'-deoxyadenosine

dAMP

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

adenine

guanine

uracil

NADP⁺

NAD⁺

NADPH

NADH

dUMP

dTMP

dTDP

dUTP

dCTP

dTTP

UDP

β-nicotinamide D-ribonucleotide

UTP

CTP

CMP

UMP

xanthosine

guanosine

adenosine

D-gluconate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

5-phospho-α-D-ribose 1-diphosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

D-tagatofuranose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

sucrose 6^F-phosphate

α-lactose 6'-phosphate

β-D-cellobiose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-D-fructofuranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

α-D-galactopyranose

β-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

maltotriose

1-kestotriose

sucrose

melibiose

α-maltose

maltotetraose

maltopentaose

maltohexaose

maltoheptaose

stachyose

raffinose

phlorisovalerophenone

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

deoxycohumulone

4-prenylphlorisovalerophenone

deoxyhumulone

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

hydroquinone

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

ethanol

propan-1-ol

phytol

methanol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

phytenal

acetaldehyde

1-propanal

isobutanal

diacetyl

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

acetate

orotate

formate

(S)-lactate

(R)-lactate

succinate

fumarate

(S)-malate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

4-tyrosol

demethylmenaquinol-8

menaquinol-8

3-methoxy-4-hydroxyphenylglycol

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

FMN

riboflavin

FMNH₂

reduced riboflavin

nicotinate

nicotinamide

coenzyme A

(R)-NADHX

(S)-NADHX

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

succinyl-CoA

3'-dephospho-CoA

acetoacetyl-CoA

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

cholate

glycocholate

isocholate

3-dehydrocholate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

putrescine

spermidine

2-aminoprop-2-enoate

trimethyl sulfonium

hydrogencarbonate

phosphonate

phosphate

diphosphate

Cd²⁺

Cu²⁺

ammonium

H⁺

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

3-sulfopyruvate

L-cysteate

5,10-methenyltetrahydrofolate mono-L-glutamate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

oxygen

ethylphosphate

DNA with lesion