an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

2-amino-2-deoxy-D-gluconate 6-phosphate

glycerone phosphate

dihydroxyacetone

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

xanthine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

carbamoyl phosphate

CO₂

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

phosphoenolpyruvate

4'-phosphopantetheine

acetyl phosphate

S-acetyldihydrolipoamide

dihydrolipoamide

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

hydrogen peroxide

DNA without lesion

N-carbamoylputrescine

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

dimethylsulfoniopropanoate

4-acetamidobutanoate

4-acetamidobutanal

D-glucurono-6,3-lactone

propynoate

prop-2-ynal

3,4-dihydroxyphenylacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

4-imidazoleacetate

imidazole acetaldehyde

D-gluconate 6-phosphate

(lipoyl)adenylate

ethanolamine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

hypotaurine

autoinducer 2

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

quinolinate

2-amino-3-carboxymuconate-6-semialdehyde

L-arginino-succinate

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-iminobutanoate

2-iminosuccinate

L-leucine

glycine

L-alanine

L-methionine

L-cysteine

L-serine

L-asparagine

L-aspartate

L-glutamate

L-ornithine

L-tyrosine

L-glutamine

L-arginine

L-threonine

N-formyl-L-methionine

L-citrulline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homocysteine

2'-deoxyadenosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyinosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

AMP

ATP

ADP

GDP

adenylo-succinate

IMP

GTP

GMP

dADP

dATP

dGDP

dGTP

ITP

dIMP

dITP

XMP

XTP

GDP-α-D-mannose

UDP-α-D-glucose

adenine

guanine

thymine

uracil

dCMP

dUMP

dTMP

dCDP

dTDP

dTTP

dUTP

dCTP

CDP

UDP

β-nicotinamide D-ribonucleotide

adenosine tetraphosphate

CTP

UTP

CMP

UMP

NAD⁺

NADP⁺

NADH

NADPH

adenosine pentaphosphate

thymidine

2'-deoxyuridine

2'-deoxycytidine

adenosine

inosine

guanosine

xanthosine

uridine

cytidine

5'-deoxy-5'-fluoroadenosine

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

β-D-fructofuranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

N-acetyl-β-D-mannosamine

N-acetyl-β-neuraminate

glycerol

D-mannitol 1-phosphate

D-sorbitol 6-phosphate

sucrose

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1,2-dibutyrin

tributyrin

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

(2E,6E)-farnesal

fluoroacetaldehyde

phytenal

acetaldehyde

1-octanal

pyruvate

2-oxobutanoate

acetate

fluoroacetate

butanoate

octanoate

phytenate

(2E,6E)-farnesoate

formate

(S)-lactate

D-glucarate

fumarate

(indol-3-yl)acetaldehyde

vanillyl mandelate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

FMN

riboflavin

FAD

FMNH₂

nicotinate

nicotinamide

coenzyme A

(R)-lipoate

(R)-NADHX

(S)-NADHX

3'-dephospho-CoA

acetyl-CoA

oleoyl-CoA

hexadecanedioyl-CoA

(indol-3-yl)acetate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

agmatine

(2Z)-2-aminobut-2-enoate

trimethyl sulfonium

sulfite

hydrogensulfite

hydrogencarbonate

phosphate

diphosphate

Mg²⁺

ammonium

H⁺

3-dimethylsulfoniopropionaldehyde

dimethyl sulfide

2-sulfinoacetaldehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

DNA with lesion