an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

CO₂

4'-phosphopantetheine

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

3-phosphooxypyruvate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

3-dehydroshikimate

shikimate

prephenate

H₂O

glycerone phosphate

dihydromethanophenazine

CoB-CoM heterodisulfide

methanophenazine

coenzyme B

thiamine diphosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

phosphoenolpyruvate

3-phosphonopyruvate

isopentenyl diphosphate

succinate semialdehyde

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N-acetylglutamyl-phosphate

oxaloacetate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(R)-mevalonate

carbamoyl phosphate

hydrogen peroxide

(2S)-2-isopropylmalate

3-methyl-2-oxobutanoate

α-D-glucosamine 1-phosphate

(R)-5-phosphomevalonate

prenyl diphosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

orotidine 5'-phosphate

arsenite

H₂

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-oxoadipate

5-phospho-β-D-ribosylamine

nicotinate adenine dinucleotide

α-ribazole

α-ribazole 5'-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-6-(D-ribitylamino)uracil

L-histidinol phosphate

imidazole acetol-phosphate

N-acetyl-L-glutamate 5-semialdehyde

5-enolpyruvoyl-shikimate 3-phosphate

(S)-4-amino-5-oxopentanoate

porphobilinogen

5-aminolevulinate

L-canavanine

(R)-1-aminopropan-2-ol

(R)-1-amino-2-propanol O-2-phosphate

carbon monoxide

4-amino-4-deoxychorismate

anthranilate

N-(5-phosphoribosyl)-anthranilate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

ectoine

(2S)-4-acetamido-2-aminobutanoate

(S)-dihydroorotate

quinolinate

β-nicotinate D-ribonucleotide

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(R)-2,3-dihydroxy-3-methylpentanoate

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

preuroporphyrinogen

histidinol

histidinal

hydrogenobyrinate a,c-diamide

ethanolamine

2-dehydropantoate

2-isopropylmaleate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

shikimate 3-phosphate

citrate

5-methylcytosine

D-erythro-imidazole-glycerol-phosphate

β-D-ribosylnicotinate

coproporphyrinogen III

(R)-pantothenate

xanthine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

DNA without lesion

oxalate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

hydrogenobyrinate

acetoacetate

4-fumaryl-acetoacetate

citraconate

(2R,3S)-3-methylmalate

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

hydroxylamine

isochorismate

5-oxo-L-proline

3-ureidopropanoate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

creatinine

5,6-dimethylbenzimidazole

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

α-D-galacturonate 1-phosphate

dialurate

ammonia

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(2S)-lactyl-2-diphospho-5'-guanosine

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl triphosphate]-D-ribitol

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl 5-phosphate]-D-ribitol

tryptamine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(L-threonylcarbamoyl)adenylate

α-D-ribose 1,5-bisphosphate

hexulose 6-phosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

L-dehydro-ascorbate

2-(sulfomethyl)thiazolidine-4-carboxylate

sulfoethylcysteine

adenosine 5'-phosphosulfate

4-amino-2-methyl-5-pyrimidinemethanol

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

4-(β-D-ribofuranosyl)-N-succinylaminobenzene 5'-phosphate

pyruvic oxime

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

enol-phenylpyruvate

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

(2E,6E)-farnesyl diphosphate

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

γ-L-glutamyl-L-cysteine

L-alanine

L-leucine

L-isoleucine

L-valine

L-phenylalanine

L-tryptophan

glycine

L-methionine

L-cysteine

L-aspartate

L-glutamate

L-arginine

L-glutamine

L-histidine

L-serine

L-lysine

L-ornithine

L-aspartyl-4-phosphate

L-threonine

L-asparagine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-tyrosine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-citrulline

L-homocysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

L-dopa

meso-diaminopimelate

5-hydroxy-L-tryptophan

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-methionine

3-phospho-L-serine

creatine

β-alanine

2-iminobutanoate

2-iminosuccinate

AMP

ATP

ADP

adenylo-succinate

dATP

GTP

dGTP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

GMP

dADP

dGDP

GDP

ITP

IDP

dITP

dIDP

IMP

hypoxanthine

XMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

cyclic-AMP

dGMP

dAMP

5,6-dihydrothymine

5,6-dihydrouracil

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-D-ribose

ADP ribose 1''-phosphate

ADP ribose 1'',2''-cyclic phosphate

GDP-α-D-mannose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-glucosamine

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

NAD⁺

NADP⁺

NADH

NADPH

adenine

guanine

uracil

cytosine

thymine

dCMP

dTMP

dUMP

dCDP

dTDP

dUDP

dTTP

dCTP

dUTP

CDP

UDP

β-nicotinamide D-ribonucleotide

CTP

UTP

CMP

UMP

cytidine-3'-monophosphate

uridine 3'-monophosphate

2'-deoxyuridine

2'-deoxycytidine

thymidine

adenosine

guanosine

xanthosine

inosine

cytidine

uridine

5-fluorouracil

L-gulonate

aldehydo-L-galactonate

1-(β-D ribofuranosyl)nicotinamide

sucrose 6^F-phosphate

D-ribulose-1,5-bisphosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

β-D-fructofuranose

glycolaldehyde

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

L-glyceraldehyde

glycerol

maltotriose

sucrose

maltohexaose

maltoheptaose

maltopentaose

maltotetraose

aldehydo-D-galacturonate

miraxanthin V

betalamate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

phytyl diphosphate

unsaturated CDP-archaeol

saturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

3-octaprenyl-4-hydroxybenzoate

ethanol

butan-1-ol

methanol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

2,3-dihydroxybenzoate

dopamine

acetaldehyde

formaldehyde

butan-1-al

methylglyoxal

(R)-acetoin

menadione

diacetyl

acetate

orotate

(R)-pantoate

aldehydo-D-glucuronate

pyruvate

2-oxoglutarate

2-oxobutanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-aminobenzoate

formate

propanoate

(R)-lactate

(S)-lactate

(S)-2-hydroxyglutarate

(1R,2S)-homoisocitrate

cis-aconitate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

fumarate

succinate

(S)-malate

4-hydroxybenzoate

2-phenylethylamine

serotonin

menadiol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydrogen cyanide

(indole-3-yl)acetonitrile

tetrahydromethanopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

5-formyl-tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

N⁵-methyltetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

7,8-dihydromethanopterin

demethylated 7,8-dihydromethanopterin

riboflavin

FMN

FMNH₂

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

hydantoin

adenosylcobalamin

sirohydrochlorin

cobyrinate

precorrin-5

precorrin-4

precorrin-6B

precorrin-8x

precorrin-7

cobalt-precorrin-2

precorrin-2

precorrin-1

cobalt-precorrin-5B

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

precorrin-3A

precorrin-3B

precorrin-6A

nicotinate

L-ascorbate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

coenzyme M

coenzyme A

methyl-CoM

oxidized coenzyme F₄₂₀-0

trimethyl sulfonium

sulfate

sulfite

thiosulfate

hydrogensulfite

hydrogencarbonate

superoxide

phosphate

diphosphate

triphosphate

Fe³⁺

Cu²⁺

Co²⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

dimethyl sulfide

sulfoacetaldehyde

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

thiocyanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

agmatine

spermidine

dehydrospermidine

(2Z)-2-aminobut-2-enoate

2-octaprenylphenol

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-citramalate

(2R)-2,3-dihydroxy-3-methylbutanoate

(2S)-2-phospholactate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-NADHX

(S)-NADHX

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

malonyl-CoA

phenylacetyl-CoA

isobutanoyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

glutaryl-CoA

4-hydroxybenzoyl-CoA

3'-dephospho-CoA

acetoacetyl-CoA

propanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

crotonyl-CoA

L-galactono-1,4-lactone

oxygen

hydrogen sulfide

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

siroheme

N₂

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosylcobinamide

adenosyl-cobinamide phosphate

cob(II)yrinate a,c-diamide

cobalt-sirohydrochlorin

cob(II)yrinate c-monoamide

cob(I)inamide

cobalt-factor III

cob(I)yrinate a,c-diamide

phosphonoacetaldehyde

ethylphosphate

phenylacetate

DNA with lesion

monodehydroascorbate radical

(indol-3-yl)acetate

methane

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

Coα-[α-(5-methylbenzimidazolyl)]-Coβ-adenosylcobamide 5'-phosphate

Coα-[α-(5-methylbenzimidazolyl)]-Coβ-adenosylcobamide