an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

porphobilinogen

preuroporphyrinogen

glycerone phosphate

CO₂

(S)-dihydroorotate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

5-amino-6-(D-ribitylamino)uracil

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

H₂O

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

shikimate

3-dehydroshikimate

sulfoethylcysteine

2-(sulfomethyl)thiazolidine-4-carboxylate

(R)-mevalonate diphosphate

1,4-dihydroxy-2-naphthoate

(2R,3S)-3-methylmalate

2-carboxy-L-threo-pentonate

citraconate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

S-ribosyl-L-homocysteine

enol-phenylpyruvate

autoinducer 2

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

pyruvic oxime

ammonia

adenosine 5'-phosphosulfate

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

hydrogenobyrinate a,c-diamide

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

deethylsimazine

N-ethylammeline

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

oxalate

urea

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

DNA without lesion

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

xanthine

quinolinate

oxalosuccinate

β-nicotinate D-ribonucleotide

hydrogen peroxide

4-amino-4-deoxychorismate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(S)-2,3,4,5-tetrahydrodipicolinate

2-dehydropantoate

coenzyme F₃₉₀-A

hydroxylamine

creatinine

hydrogenobyrinate

acetyl phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

carbonic acid

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

hexulose 6-phosphate

β-L-arabinose 1-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

arsenite

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

hydrogen selenide

O-acetyl-L-serine

shikimate 3-phosphate

4'-phosphopantetheine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

L-canavanine

isopentenyl diphosphate

prenyl diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

pseudouridine 5'-phosphate

selenophosphate

indole-3-ethanol

orotidine 5'-phosphate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

N-(5-phosphoribosyl)-anthranilate

anthranilate

prephenate

3-phosphooxypyruvate

oxaloacetate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

carbamoyl phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

phosphoenolpyruvate

H₂

imidazole acetol-phosphate

L-histidinol phosphate

(2E,6E)-farnesyl diphosphate

pristanate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-homocysteine

DNA with lesion

cobalt-precorrin-2

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cobalt-precorrin-4

cobalt-precorrin-5A

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

N₂

uroporphyrinogen-I

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

sn-glycerol 1-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

(R)-citramalate

2-octaprenylphenol

monodehydroascorbate radical

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

coenzyme M

sulfoacetaldehyde

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

sulfate

sulfite

selenide

thiosulfate

OH^-

hydrogensulfite

hydrogencarbonate

trithionate

chloride

phosphate

triphosphate

diphosphate

Na⁺

ammonium

H⁺

Fe²⁺

Co²⁺

agmatine

dehydrospermidine

spermidine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

methane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

estrone

glycocholate

cholate

3-β-hydroxyandrost-5-en-17-one

succinyl-CoA

acetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

2-methylacetoacetyl-CoA

3'-dephospho-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

crotonyl-CoA

phytenoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

decanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

L-galactono-1,4-lactone

FAD

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

menaquinol-8

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

caldariellaquinone

coenzyme A

methyl-CoM

oxidized coenzyme F₄₂₀-1

oxidized coenzyme F₄₂₀-2

oxidized coenzyme F₄₂₀-0

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5-formyl-tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

N⁵-methyltetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

L-ascorbate

nicotinate

thiamine

pyridoxal 5'-phosphate

precorrin-2

precorrin-8x

precorrin-1

precorrin-6B

precorrin-6A

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2'-phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

inosine

guanosine

xanthosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

GDP

ADP

IDP

IMP

AMP

XMP

GMP

GTP

ATP

XTP

ITP

orotate

dUDP

dTDP

dTTP

uracil

dCMP

dCDP

UDP

CDP

CTP

UTP

dCTP

dUTP

dUMP

dTMP

UDP-α-D-galacturonate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-β-L-arabinopyranose

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

UMP

CMP

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-aminobenzoate

L-α-amino-ε-keto-pimelate

L-serine

creatine

L-glutamine

glycine

L-leucine

L-glutamate

D-glutamate

L-arginine

L-lysine

L-histidine

L-aspartate

L-threonine

L-cysteine

L-tyrosine

L-asparagine

L-phenylalanine

L-tryptophan

L-aspartyl-4-phosphate

3-phospho-L-serine

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

S-adenosyl-L-methionine

L-homoserine

L-canaline

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-ornithine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

chorismate

fumarate

succinate

(S)-malate

D-threo-isocitrate

(S)-lactate

pyruvate

acetate

formate

propanoate

butanoate

octanoate

decanoate

(15Z)-tetracosenoate

oleate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

palmitate

(R)-pantoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxoglutarate

2-oxobutanoate

diacetyl

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

glycolaldehyde

butan-1-al

isobutanal

formaldehyde

acetaldehyde

L-glyceraldehyde

D-glyceraldehyde

α-D-ribofuranose

butan-1-ol

ethanol

glycerol

(3R)-linalool

(3S)-linalool

ethylene glycol

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

sucrose

β-D-fructofuranose

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

ADP ribose 1'',2''-cyclic phosphate

ADP ribose 1''-phosphate

ADP-D-ribose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-AMP

adenylo-succinate

β-nicotinamide D-ribonucleotide

2-iminosuccinate