an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

picolinate

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

4-oxalocrotonate

aminoacetone

4-oxoglutaramate

1-piperideine-2-carboxylate

1-piperideine 6-carboxylate

5-aminopentanoate

isoquinoline

isoquinolin-2(1H)-one

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

3-oxopropanoate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

6-aminohexanoate

6-oxohexanoate

adipate

carbon monoxide

acetoacetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

enol-phenylpyruvate

6-aminohexanoate cyclic dimer

(2-hydroxyphenyl)acetate

6-aminohexanoate linear dimer

homogentisate

5-(methylsulfanyl)-ribulose 1-phosphate

1,2-dichloroethane

2-chloroethanol

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

deethylsimazine

β-D-ribosylnicotinate

N-ethylammeline

oxalosuccinate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

N-ethylammelide

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

1,4-dihydroxy-2-naphthoate

2-oleoylglycerol

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

shikimate

urea-1-carboxylate

3-dehydroshikimate

3-dehydroquinate

4-amino-4-deoxychorismate

shikimate 3-phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

citrate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

4-amino-2-methyl-5-pyrimidinemethanol

(R)-mevalonate diphosphate

3'-phosphoadenylyl-sulfate

chloroacetaldehyde

(R)-5-phosphomevalonate

adenosine 5'-phosphosulfate

isopentenyl diphosphate

prenyl diphosphate

adenosine 5'-phosphoselenate

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

sinapate

sinapoyl-CoA

ethanolamine

5-hydroxyferulate

5-hydroxy-feruloyl-CoA

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

selenodiglutathione

glutathioselenol

pimeloyl-CoA

3-keto-β-D-galactose

prephenate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

carbamoyl phosphate

phloretin

pinocembrin chalcone

L-canavanine

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

pinosylvin

selenophosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

S-adenosyl 3-(methylsulfanyl)propylamine

trans-O-hydroxybenzylidenepyruvate

1,6-anhydro-N-acetyl-β-muramate

phosphoenolpyruvate

(S)-mandelate

(R)-mandelate

N-acetyl-D-muramate 6-phosphate

muconolactone

2-iminoacetate

(+)-muconolactone

cis,cis-muconate

N-acetyl-D-galactosamine 6-phosphate

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

D-galactosamine-6-phosphate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

orotidine 5'-phosphate

(S)-3-methyl-2-oxopentanoate

thiamine phosphate

4-methyl-2-oxopentanoate

thiamine diphosphate

benzoylsuccinyl-CoA

4-methyl-3-oxoadipate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

5-deoxy-α-ribose 1-phosphate

(S)-dihydroorotate

3'-ketosucrose

salicyl alcohol

coproporphyrinogen III

CO₂

methylsalicylate

N-succinyl-L,L-2,6-diaminopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

2-dehydropantoate

N-Formyl-L-kynurenine

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

(4-hydroxyphenyl)acetate

(R)-2,3-dihydroxy-3-methylpentanoate

6-amino-2-oxohexanoate

hydroxypyruvate

4-aminobutanoate

prephytoene diphosphate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

nicotinate adenine dinucleotide

1,4-dihydroxy-2-naphthoyl-CoA

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

2-phosphoglycolate

glycolate

dimethylamine

H₂O

ammonia

(E)-glutaconate

(R)-mevalonate

N-ethylglycine

ethylamine

3-hydroxyanthranilate

(2Z,4E)-2-aminomuconate

histidinal

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

2-oxopent-4-enoate

D-erythro-imidazole-glycerol-phosphate

histidinol

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5,6-dimethylbenzimidazole

4-imidazolone-5-propanoate

D-gluconate 6-phosphate

adenosine 3',5'-bisphosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

6-phospho D-glucono-1,5-lactone

S-formylglutathione

3-amino-1-hydroxyacetone 1-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

α-D-glucosamine 1-phosphate

streptomycin 6-phosphate

3-hydroxy-2-methyl-1H-quinolin-4-one

N-acetylanthranilate

4'-phosphopantetheine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

hydrogen selenide

O-acetyl-L-serine

(R)-pantothenate

2,5-diaminohexanoate

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

5-aminolevulinate

porphobilinogen

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

3-deoxy-D-arabino-heptulosonate 7-phosphate

streptomycin 3''-phosphate

3-oxo-3-phenylpropanoyl-CoA

imidazole acetol-phosphate

L-histidinol phosphate

quinolinate

3-deoxy-D-manno-octulosonate 8-phosphate

N-carbamoylputrescine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

3-deoxy-α-D-manno-2-octulosonate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

4-acetamidobutanal

4-acetamidobutanoate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-oxo-L-proline

methylamine

formamide

xanthine

3-methyl-2-oxobutanoate

N^β-acetylstreptothricin F

2-maleylacetate

oxaloacetate

urocanate

glutathione disulfide

carbonic acid

arsenite

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(L-threonylcarbamoyl)adenylate

dethiobiotin

L-β-lysine

H₂

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

4-hydroxy-2-nonenal

lipid IV_A

lipid X

lipid A disaccharide (E. coli)

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

acetyl phosphate

2,3-didehydroadipyl-CoA

dialurate

(R)-1-amino-2-propanol O-2-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

6-deoxyerythronolide B

urea

γ-L-glutamyl 5-phosphate

4-methylumbelliferyl glucoside

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

4-hydroxybenzaldehyde

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

scopolin

α-ribazole 5'-phosphate

cis-coumarinic acid-β-D-glucoside

α-ribazole

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

3-phosphooxypyruvate

β-nicotinate D-ribonucleotide

DNA without lesion

(S)-2-amino-6-oxohexanoate

(S)-4-amino-5-oxopentanoate

preuroporphyrinogen

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

2-(α-hydroxyethyl)thiamine diphosphate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

hydrogen peroxide

itaconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

glycerone phosphate

(2E,6E)-farnesyl diphosphate

pristanate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

orthanilate

3-sulfocatechol

(R)-S-lactoylglutathione

3-sulfino-L-alanine

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

superoxide

bromide

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

K⁺

choline

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

agmatine

dehydrospermidine

spermine

spermidine

cadaverine

putrescine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2,5-dichloro-p-quinone

bromochloromethane

2-chloroacetate

2,5-dichloro-p-quinol

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

2,5-dichlorophenol

acetamide

6-caprolactam

isopenicillin N

penicillin N

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

estrone

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-dehydrocholate

isocholate

glycocholate

cholate

3-β-hydroxyandrost-5-en-17-one

phenylacetate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

all-trans-retinyl palmitate

erythronolide B

3-α-mycarosylerythronolide B

erythromycin D

D-glucono-1,5-lactone

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

AAI-1

HAI-1

PAI-1

PAI-1-2

VAI-1

VAI-1-2

(S)-3-aminobutanoyl-CoA

phenylacetyl-CoA

trans-caffeoyl-CoA

dihydro-4-coumaroyl-CoA

isovaleryl-CoA

2-methylacetoacetyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

malonyl-CoA

succinyl-CoA

2-methylbutanoyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

β-alanyl-CoA

acryloyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

chenodeoxycholoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

benzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

4-hydroxybenzoyl-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

dihomo γ-linolenoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

(2E,5E)-dodeca-2,5-dienoyl-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

itaconyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(E)-cinnamoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

propanoyl-CoA

butanoyl-CoA

lauroyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

FMNH₂

FMN

FADH₂

FAD

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

L-ascorbate

riboflavin

thiamine

nicotinate

all-trans-retinol

pyridoxine 5'-phosphate

pyridoxamine

pyridoxal

pyridoxine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

(S)-1-pyrroline-5-carboxylate

adenine

guanine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

xanthosine

inosine

guanosine

hypoxanthine

dAMP

dGMP

dIMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

GDP

ADP

IDP

XMP

IMP

AMP

GMP

GTP

ATP

XTP

ITP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

uracil

dTDP

dCMP

dUMP

dTMP

uridine 3'-monophosphate

cytidine-3'-monophosphate

dTTP

orotate

dCDP

CDP

dUDP

UDP

dCTP

CTP

dUTP

UTP

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

UMP

CMP

UDP-α-D-galacturonate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-mannosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-D-desosamine

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-mycarose

dTDP-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

isoguanine

preQ₁

adenosylcobalamin

cob(I)alamin

precorrin-2

precorrin-1

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

2-hydroxychromene-2-carboxylate

2',4,4',6'-tetrahydroxychalcone

isoliquiritigenin

coumarin

scopoletin

4-methylumbelliferone

preQ₀

(indole-3-yl)acetonitrile

acrylonitrile

taxiphyllin

hydrogen cyanide

linustatin

neolinustatin

linamarin

lotaustralin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

salicylaldehyde

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

2-hydroxylaminobenzoate

2-nitrobenzoate

4-tyrosol

3,4-dihydroxyphenylacetate

catechol

protocatechuate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

4-coumarate

coumarinate

trans-caffeate

salicylate

4-aminobenzoate

benzoate

6-isobutyl-4-hydroxy-2-pyrone

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-methylphenol

L-α-amino-ε-keto-pimelate

L-kynurenine

L-cysteine

L-threonine

L-tyrosine

L-asparagine

L-glutamine

L-serine

glycine

L-arginine

L-lysine

L-histidine

L-aspartate

L-glutamate

L-phenylalanine

L-tryptophan

D-glutamate

D-proline

D-lysine

D-alanine

L-aspartyl-4-phosphate

L-saccharopine

L-2-amino-3-oxobutanoate

sarcosine

N⁶,N⁶-dimethyl-L-arginine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-4-hydroxyglutamate semialdehyde

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-homoserine

L-aspartate 4-semialdehyde

L-ornithine

S-sulfo-L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

L-canaline

hypoglycin A

meso-diaminopimelate

L-selenocysteine

L-allo-threonine

L-methionine

L-isoleucine

L-proline

L-valine

L-leucine

L-alanine

L-isoglutamine

L,L-diaminopimelate

L-cystathionine

β-alanine

(S)-3-amino-2-methylpropanoate

(15Z)-tetracosenoate

butanoate

decanoate

octanoate

13(S)-HPOTE

oleate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

stearate

palmitate

acetate

D-gluconate

(R)-pantoate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

2-oxoglutarate

glyoxylate

2-oxobutanoate

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

(S)-malate

cis-aconitate

D-threo-isocitrate

(R)-lactate

(S)-lactate

(R)-2-hydroxyglutarate

(R)-glycerate

formate

propanoate

3-oxoadipate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

formaldehyde

butan-1-al

1-octanal

acetaldehyde

1-propanal

isobutanal

(S)-lactaldehyde

phytenal

myo-inositol

phytate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

1D-myo-inositol 3-monophosphate

butan-1-ol

methanol

ethanol

propan-1-ol

phytol

glycerol

D-arabinitol

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

di-trans,octa-cis-undecaprenyl phosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

all-trans-phytoene

15-cis-phytoene

all-trans phytofluene

di-trans,octa-cis-undecaprenol

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

streptomycin

streptothricin F

trans-resveratrol

1-(β-D ribofuranosyl)nicotinamide

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

allolactose

α,α-trehalose

α-lactose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

D-xylulose

1-O-acetyl-α-maltose

3'-ketolactose

3-dehydro-D-glucopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-rhamnose

GDP-4-dehydro-α-D-rhamnose

aldehydo-L-galactonate

L-gulonate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-dGTP

pppGpp

ppGpp

5'-deoxyadenosine

cyclic-AMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-GMP

adenylo-succinate

5-hydroxy-CTP

2-hydroxy-dATP

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

hypoglycin B

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

ethylphosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosylcobyrate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

adenosyl-cobinamide phosphate

cob(II)yrinate a,c-diamide

Mg-protoporphyrin

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrin IX

(Z,Z)-biliverdin-IX α

siroheme

2-iminobutanoate

2-iminosuccinate

S⁰

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

monodehydroascorbate radical

hydroxyl radical

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione