an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-3-methyl-2-oxopentanoate

carbamoyl phosphate

prenyl diphosphate

acetoacetate

3-hydroxypropanoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

S-adenosyl 3-(methylsulfanyl)propylamine

N-methylethanolamine phosphate

glutathione disulfide

5-(methylsulfanyl)-α-D-ribose

orotidine 5'-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

2-iminoacetate

urea

isopentenyl diphosphate

N-tetradecanoylglycyl-peptide

2-succinylbenzoate

(R)-2,3-dihydroxy-3-methylpentanoate

4-amino-4-deoxychorismate

N-acetylglutamyl-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N-succinyl-2-amino-6-ketopimelate

N¹-(5-phospho-β-D-ribosyl)glycinamide

L-histidinol phosphate

3-dehydroquinate

(S)-2,3,4,5-tetrahydrodipicolinate

anthranilate

ethanolamine

(S)-2,3-dihydrodipicolinate

(S)-5-amino-3-oxohexanoate

oxaloacetate

arsenite

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-enolpyruvoyl-shikimate 3-phosphate

mesaconate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

N-(5-phosphoribosyl)-anthranilate

acetyl phosphate

CDP-N-methylethanolamine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

ammonia

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

L-dehydro-ascorbate

glycyl-peptide

3-dehydroshikimate

isochorismate

H₂O

xanthine

N-acetyl-L-glutamate 5-semialdehyde

3-sulfinopyruvate

coproporphyrinogen III

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

CDP-N-dimethylethanolamine

histidinal

(R)-pantothenate

S-methyl-5'-thioadenosine

porphobilinogen

N-succinyl-L,L-2,6-diaminopimelate

5-(methylsulfanyl)-ribulose 1-phosphate

thiamine phosphate

β-nicotinate D-ribonucleotide

hydrogen selenide

(R)-mevalonate diphosphate

imidazole acetol-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

O-phosphoethanolamine

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

H₂

(R)-4'-phosphopantothenate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

citrate

4'-phosphopantetheine

shikimate 3-phosphate

hydrogen peroxide

preuroporphyrinogen

(R)-mevalonate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(3S,5S)-3,5-diaminohexanoate

phosphoenolpyruvate

5-phospho-β-D-ribosylamine

1,4-dihydroxy-2-naphthoate

prephenate

L-β-lysine

CO₂

butanoyl phosphate

4-amino-2-methyl-5-pyrimidinemethanol

glycerone phosphate

pseudouridine 5'-phosphate

3-oxopropanoate

(R)-5-phosphomevalonate

α-D-glucosamine 1-phosphate

5-aminolevulinate

6-phospho D-glucono-1,5-lactone

hexulose 6-phosphate

N-monomethylethanolamine

N-dimethylethanolamine phosphate

nicotinate adenine dinucleotide

L-arginino-succinate

phosphocholine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

quinolinate

hydroxypyruvate

shikimate

5-oxo-L-proline

α-D-ribose 1,5-bisphosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

(S)-2-aceto-2-hydroxybutanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

histidinol

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

2-C-methyl-D-erythritol 4-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

selenophosphate

N-carbamoylputrescine

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(S)-dihydroorotate

3-deoxy-D-arabino-heptulosonate 7-phosphate

dihydrolipoamide

D-gluconate 6-phosphate

1,4-dihydroxy-2-naphthoyl-CoA

thiamine diphosphate

(S)-4-amino-5-oxopentanoate

lipoamide

N-dimethylethanolamine

D-erythro-imidazole-glycerol-phosphate

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

5,10-methenyltetrahydrofolate mono-L-glutamate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

(S)-citramalate

cytosine

uracil

adenine

guanine

hypoxanthine

adenosine

inosine

guanosine

xanthosine

AMP

IMP

GMP

XMP

ADP

GDP

ATP

GTP

dGMP

dATP

dGTP

dADP

dGDP

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

FADH₂

FAD

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

tetrahydrofolate-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

orotate

UDP

CTP

CDP-choline

dCTP

CDP-ethanolamine

dUMP

dCDP

dTTP

CDP

UTP

dTDP

dTMP

dUDP

dUTP

2'-deoxycytidine

thymidine

2'-deoxyuridine

uridine

cytidine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine

UMP

CMP

hydrogen cyanide

urate

4-hydroxybenzoate

2,3-dihydroxybenzoate

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-nitrophenol

4-methylphenol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-8

ubiquinol-8

ubiquinol-8

demethylmenaquinol-8

menaquinol-8

enterobactin

(E)-glutaconyl-CoA

acryloyl-CoA

3'-dephospho-CoA

(S)-3-aminobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-hydroxypropanoyl-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

glutaryl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

myristoyl-CoA

acetoacetyl-CoA

crotonyl-CoA

(S)-malyl-CoA

L-galactono-1,4-lactone

L-homocysteine

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

NADP⁺

NAD⁺

ubiquinone-8

NADPH

NADH

D-gluconate

α-D-galactopyranose

β-L-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

β-D-fructofuranose

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycolaldehyde

glycerol

ADP-α-D-glucose

ADP-D-ribose

GDP-β-L-galactose

GDP-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-gulose

GDP-4-dehydro-α-D-rhamnose

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

β-L-galactose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-ribose-1-phosphate

D-glyceraldehyde 3-phosphate

sucrose

N-acetyl-D-mannosamine 6-phosphate

oxygen

thiamine

nicotinate

L-ascorbate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine

pyridoxine

pyridoxamine 5'-phosphate

pyridoxal

coenzyme A

(2E,6E)-farnesyl diphosphate

3-octaprenyl-4-hydroxybenzoate

geranyl diphosphate

all-trans-octaprenyl diphosphate

L-phenylalanine

L-tryptophan

L-histidine

L-tyrosine

L-leucine

L-cysteine

L-alanine

glycine

L-methionine

L-isoleucine

L-aspartyl-4-phosphate

(2S, 3S)-3-methylaspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-formyl-L-methionine

N-carbamoyl-L-aspartate

L-glutamate

β-alanine

L-citrulline

L-glutamine

L-aspartate

L-threonine

L-asparagine

L-serine

L-lysine

L-arginine

L-aspartate 4-semialdehyde

L-ornithine

3-sulfino-L-alanine

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

1-aminocyclopropane-1-carboxylate

meso-diaminopimelate

L-cystathionine

L,L-diaminopimelate

4-nitrophenyl phosphate

sn-glycerol 3-phosphate

ethene

H⁺

Ca²⁺

Fe²⁺

hydrogencarbonate

sulfite

phosphate

diphosphate

triphosphate

2-octaprenylphenol

2-iminosuccinate

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

protoheme

glutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

(R)-S-lactoylglutathione

2-methoxy-6-(all-trans-octaprenyl)phenol

agmatine

aminopropylcadaverine

spermidine

cadaverine

putrescine

spermine

choline

methylglyoxal

acetaldehyde

1-octanal

formaldehyde

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-GMP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

3-(all-trans-octaprenyl)benzene-1,2-diol

myo-inositol

1D-myo-inositol 3-monophosphate

phytate

D-myo-inositol (3,4)-bisphosphate

D-myo-inositol 1,3,4,5,6-pentakisphosphate

D-myo-inositol (3,4,5,6)-tetrakisphosphate

D-myo-inositol (3,4,6)-trisphosphate

1-octanol

ethanol

butanoate

octanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

propanoate

formate

acetate

pyruvate

(R)-lactate

(S)-lactate

(2R,3S)-2-methylisocitrate

glyoxylate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

chorismate

succinate

fumarate

(S)-malate

cis-2-methylaconitate

cis-aconitate

(2S,3S)-2-methylcitrate

D-threo-isocitrate