ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C1555

(S)-2,3-dihydrodipicolinate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C1538

2-C-methyl-D-erythritol 4-phosphate

C1531

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

C1530

(2R,3S)-3-isopropylmalate

C3344

2-dehydro-3-deoxy-D-gluconate

C1528

2-dehydropantoate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C3417

(S)-3-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C1457

(2R,4S)-2, 4-diaminopentanoate

C1454

2,5-didehydro-D-gluconate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C3319

4-methyl-2-oxopentanoate

C3350

2-oxoadipate

C1438

(2S)-2-isopropylmalate

C1431

3-dehydroshikimate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C6361

acetoacetate

C1391

3-mercaptopyruvate

C1353

3-phosphooxypyruvate

C6597

3-ureidopropanoate

C1325

4-amino-4-deoxychorismate

C1323

5-aminoimidazole-4-carboxylate

C1321

4-aminobutanoate

C1291

(4-hydroxyphenyl)acetate

C1268

(R)-4'-phosphopantothenate

C1231

5-aminolevulinate

C1223

5-aminopentanoate

C8407

5-hydroxyindole acetaldehyde

C1196

S-methyl-5'-thioadenosine

C1184

5-phospho-β-D-ribosylamine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C6618

5-ureidoimidazole-4-carboxylate

C2346

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

C1112

ManNAc-GlcNAc-PP-undecaprenol

C1110

N4-(β-N-acetyl-D-glucosaminyl)-L-asparagine

C1108

acetyl phosphate

C1102

O-acetyl-L-serine

C1038

α-ribazole

C1036

α-ribazole 5'-phosphate

C1024

aminoacetone

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C3850

5-amino-6-(D-ribitylamino)uracil

C1010

ammonia

C1002

anthranilate

C939

butanoyl phosphate

C933

L-canavanine

C932

canavaninosuccinate

C2191

carbamoyl phosphate

C928

CO2

C927

carbon monoxide

C891

citrate

C873

coproporphyrinogen III

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C506

3-ethylmalate

C446

5-hydroxyindole thiazolidine carboxylate

C352

2-iminoacetate

C191

L-selenocystathionine

C163

dehydroascorbate (bicyclic form)

C162

cyclic- 3,4-O-oxalyl-L-threonate

C160

2-carboxy-L-threo-pentonate

C159

2-carboxy-L-xylonolactone

C158

cyclic-2,3-O-oxalyl-L-threonate

C15184

D-ribofuranose 2,5-bisphosphate

C15056

salicyl alcohol

C11477

(R)-2-hydroxy-4-methylpentanoate

C2788

4-methylpentanoate

C15045

4-methylpentanoyl-CoA

C15014

N-acetyl-L,L-2,6-diaminopimelate

C9431

1,2-dihydro-β-NADP

C14924

carboxyphosphate

C14180

dihydrolipoate

C12756

(2R)-2-amino-4-oxopentanoate

C14156

L-xylo-hex-3-ulono-1,4-lactone

C14153

2,3-dioxo-L-gulonate

C14152

pyruvic oxime

C3259

2-oxovalerate

C3295

2-keto-D-gluconate

C14074

prenyl diphosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C13967

4-aminoimidazole

C13946

5-(methylsulfanyl)-α-D-ribose

C12029

S-ribosyl-L-homocysteine

C13928

urea-1-carboxylate

C13912

3,5-dihydro-4H-imidazol-4-one

C12031

S-Inosyl-L-homocysteine

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C13909

CDP-glycerol

C13854

hydrogen selenide

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C13813

O-D-alanyl-poly(ribitol phosphate)

C13786

(2S)-2-isopropyl-3-oxosuccinate

C13723

arsenite

C13635

β-D-ribosylnicotinate

C13627

DNA without lesion

C13545

4-(γ-L-glutamylamino)butanoate

C13417

2-isopropylmaleate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C12848

N5-carboxyaminoimidazole ribonucleotide

C12604

5-phospho-α-D-ribose 1,2-cyclic phosphate

C12586

α-D-ribose-1-methylphosphonate 5-phosphate

C12494

N-acetyl-D-muramate 6-phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C12390

D-erythro-imidazole-glycerol-phosphate

C15282

D-galactosamine-6-phosphate

C9422

nicotinate adenine dinucleotide

C12369

3-dehydroquinate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C12364

isopentenyl diphosphate

C12352

(S)-dihydroorotate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C12333

dihydrolipoamide

C10349

glycerone phosphate

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C12324

autoinducer 2

C12315

5,6-dimethylbenzimidazole

C12274

enol-phenylpyruvate

C12254

ethanolamine

C12218

α-D-glucosamine 1-phosphate

C12192

carbonic acid

C12178

histidinal

C12176

histidinol

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C12164

H2

C12162

hydrogen peroxide

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C12146

hydroxylamine

C12139

preuroporphyrinogen

C12125

imidazole acetol-phosphate

C8333

(indol-3-yl)pyruvate

C12102

isobutanol

C12096

isochorismate

C12056

L-arginino-succinate

C12054

L-dehydro-ascorbate

C12052

5'-phosphoguanylyl(3'→5')guanosine

C12044

L-histidinol phosphate

C12016

(lipoyl)adenylate

C6349

3-oxopropanoate

C11934

N-acetyl-β-glucosaminylamine

C11932

N-acetyl-D-galactosamine 6-phosphate

C11930

N-acetylglutamyl-phosphate

C11857

β-nicotinate D-ribonucleotide

C6614

O-ureido-L-homoserine

C11836

hydroxypyruvate

C11832

orotidine 5'-phosphate

C6444

oxaloacetate

C11826

oxalosuccinate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11802

4'-phosphopantetheine

C11800

(R)-pantothenate

C11479

phosphoenolpyruvate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C11773

phosphocholine

C15283

poly(ribitol phosphate)

C11767

porphobilinogen

C11760

prephenate

C11754

propanoyl phosphate

C11715

quinolinate

C11711

(R)-1-amino-2-propanol O-2-phosphate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11693

(indol-3 yl)acetyl-CoA

C11690

S-acetyldihydrolipoamide

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C11654

selenophosphate

C11653

shikimate

C11652

shikimate 3-phosphate

C11639

succinate semialdehyde

C11634

tartronate semialdehyde

C11606

thiamine phosphate

C11604

thiamine diphosphate

C7865

urea

C11543

H2O

C11539

xanthine

C10052

FMN

C10053

FAD

C10049

FMNH2

C5394

(R)-NADHX

C5392

(S)-NADHX

C14500

NADH

C14497

NADPH

C4018

NADP+

C4020

NAD+

C5032

carbamate

C3530

L-2-aminoadipate

C3536

L-α-amino-ε-keto-pimelate

C12303

L-citrulline

C5642

L-arginine

C5643

L-asparagine

C5612

L-cysteine

C5609

L-glutamine

C5607

L-glutamate

C5605

L-histidine

C5603

L-isoleucine

C5597

L-alanine

C5596

L-aspartate

C5588

L-leucine

C5584

L-lysine

C5583

L-methionine

C2469

L-phenylalanine

C5581

L-proline

C5579

L-serine

C5577

L-threonine

C5573

L-tyrosine

C5571

L-valine

C12067

glycine

C12203

S-adenosyl-L-homocysteine

C12261

hypoglycin A

C12247

L-homocysteine

C12245

L-homoserine

C12239

L-aspartate 4-semialdehyde

C12233

L-glutamate-5-semialdehyde

C12231

L-ornithine

C12229

O-phospho-L-homoserine

C12227

O-succinyl-L-homoserine

C15292

S-adenosyl-L-methionine

C2426

S-sulfo-L-cysteine

C12223

D-ornithine

C5592

L-selenocysteine

C5585

meso-diaminopimelate

C8807

D-lysine

C8805

D-aspartate

C8799

D-alanine

C8797

D-glutamate

C8796

D-proline

C8795

D-serine

C12073

L-aspartyl-4-phosphate

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C5473

L-2-acetamido-6-oxoheptanedioate

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C13322

N-carbamoyl-L-aspartate

C12201

L-2-amino-3-oxobutanoate

C12063

seleno-L-homocysteine

C11955

O-acetyl-L-homoserine

C5553

N-formimino-glycine

C13320

N-carbamoylglycine

C14976

N-acetyl-L-methionine

C14973

N-acetyl-L-glutamate

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C11441

β-alanine

C11439

β-glutamate

C11434

(R)-3-amino-2-methylpropanoate

C3301

2-oxoglutarate

C3308

pyruvate

C3351

glyoxylate

C3257

2-oxobutanoate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C11409

2,3-dihydroxybenzoate

C11429

salicylate

C8974

4-aminobenzoate

C8968

benzoate

C3383

palmitate

C3387

stearate

C3409

octanoate

C3415

laurate

C3418

butanoate

C6163

leukotriene-D4

C6165

leukotriene-E4

C13210

oleate

C523

(2E,6E)-farnesoate

C13260

phytenate

C951

4-hydroxybutanoate

C6186

(S)-lactate

C6185

(R)-lactate

C11476

(R)-glycerate

C11212

(R)-3-hydroxybutanoate

C11481

orotate

C11509

fluoroacetate

C11517

acetate

C11482

(R)-pantoate

C4985

(S)-1-pyrroline-5-carboxylate

C2137

D-tagaturonate

C2021

aldehydo-D-galacturonate

C3420

propanoate

C3421

formate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C5463

3-(carbamoylamino)-2-methylpropanoate

C8950

chorismate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C6697

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

C3731

glycerol

C3672

D-sorbitol 6-phosphate

C3673

D-mannitol 1-phosphate

C2903

hydroquinone

C14807

phytol

C3450

ethanol

C3449

butan-1-ol

C3447

propan-1-ol

C3448

methanol

C6829

salicylaldehyde

C2824

(2E,6E)-farnesal

C2860

fluoroacetaldehyde

C2858

glycolaldehyde

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2065

aldehydo-D-ribose

C2062

β-D-ribofuranose

C2061

α-D-ribofuranose

C9494

D-glyceraldehyde

C3649

benzaldehyde

C14804

phytenal

C6090

methylglyoxal

C6246

(S)-lactaldehyde

C3485

butan-1-al

C3494

isobutanal

C3500

acetaldehyde

C3523

1-propanal

C3529

1-octanal

C3483

formaldehyde

C10143

menadione

C2040

diacetyl

C10301

agmatine

C3548

putrescine

C3564

spermine

C3574

spermidine

C3592

N-acetylputrescine

C3610

N1-acetylspermidine

C3583

N1-acetylspermine

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C6708

2-iminopropanoate

C11520

hypoglycin B

C3675

D-altronate

C4086

1-(β-D ribofuranosyl)nicotinamide

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C11589

6-O-acetyl-α-D-glucopyranosyl-(1→4)-D-glucose

C8811

α-D-glucopyranose 1-phosphate

C5615

D-glyceraldehyde 3-phosphate

C8669

methyl β-D-glucoside 6-phosphate

C6661

sucrose 6G-phosphate

C6669

N-monoacetylchitobiose 6'-phosphate

C6671

N,N'-diacetylchitobiose 6'-phosphate

C8666

UDP-α-D-galactose

C10331

salicin 6-phosphate

C10334

arbutin-6-phosphate

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C10263

ADP-α-D-glucose

C1009

GDP-α-D-mannose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C7780

UDP-α-D-glucose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7790

UDP-N-acetyl-α-D-mannosamine

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7722

UDP-α-D-glucuronate

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7822

UDP-N-acetyl-α-D-muramate

C8547

UDP-N-acetyl-α-D-mannosaminuronate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C7444

UDP-N-acetyl-α-D-glucosamine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10372

a peptidoglycan dimer (S. aureus)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3132

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C14595

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C10604

D-ribulose 5-phosphate

C10607

L-ribulose 5-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8819

L-fuculose 1-phosphate

C8815

α-D-galactose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2116

β-D-galactose 6-phosphate

C2115

α-D-galactose 6-phosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10323

D-tagatofuranose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C10688

maltotriose

C10691

maltohexaose

C10692

maltoheptaose

C10689

maltotetraose

C10690

maltopentaose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C13570

N-acetyl-β-D-mannosamine

C5286

N-acetyl-β-D-glucosamine

C4960

N-acetyl-β-neuraminate

C2012

keto-D-fructose

C8835

β-D-fructofuranose

C2143

D-xylulose

C10288

adenylo-succinate

C7757

ADP

C7809

AMP

C7844

ATP

C5552

5'-deoxyadenosine

C7823

dADP

C7783

dATP

C7813

2'-deoxyadenosine

C7848

2'-deoxyguanosine

C7755

2'-deoxyinosine

C7807

dGDP

C7751

dGTP

C7795

GDP

C10267

pppGpp

C7827

GMP

C7745

GTP

C10266

ppGpp

C7785

hypoxanthine

C7741

IMP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7811

XMP

C13346

CDP-choline

C4012

5,6-dihydrouracil

C7801

5,6-dihydrothymine

C9540

preQ1

C2226

purine

C9454

adenine

C9455

guanine

C10601

thymine

C8739

uracil

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C2519

thymidine

C15088

adenosine

C15094

xanthosine

C15091

inosine

C15085

guanosine

C2706

uridine

C2702

cytidine

C1817

cyclic di-3',5'-guanylate

C8724

dUTP

C8772

dCTP

C8764

dTTP

C8744

dTMP

C8770

dUMP

C8755

dCMP

C8733

dCDP

C8720

dTDP

C8752

dUDP

C9420

two adjacent thymidines in DNA

C9419

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

C8732

CDP

C8714

UDP

C2241

UMP

C2245

CMP

C8761

CTP

C8760

UTP

C4240

reduced β-nicotinamide D-ribonucleotide

C4243

β-nicotinamide D-ribonucleotide

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C10996

nicotinamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C7151

6,8-dihydroxypurine

C3093

urate

C6043

4-methylphenol

C2915

menadiol

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6617

N-acetyl-D-mannosamine 6-phosphate

C10614

coenzyme A

C10612

tetrahydrosarcinapterin

C10617

5-methyl-tetrahydrosarcinapterin

C10611

(R)-lipoate

C6007

MoO2-molybdopterin cofactor

C6003

guanylyl molybdenum cofactor

C5998

thio-molybdenum cofactor

C10597

7,8-dihydrofolate monoglutamate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C2017

α-D-glucosamine 6-phosphate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C11268

2-chloro-5-methyl-dienelactone

C11266

3-chloro-2-methyl-dienelactone

C11265

3,5-dichloro-2-methyl-muconolactone

C10102

cis-dienelactone

C5302

4-hydroxybutanoyl-CoA

C5298

acetyl-CoA

C4984

vinylacetyl-CoA

C4981

CoA-disulfide

C4937

3'-dephospho-CoA

C4922

isobutanoyl-CoA

C4913

malonyl-CoA

C4901

succinyl-CoA

C5635

oleoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C6197

3-oxooctanoyl-CoA

C6201

3-oxododecanoyl-CoA

C6200

3-oxohexanoyl-CoA

C6198

3-oxodecanoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C5892

palmitoyl-CoA

C5885

stearoyl-CoA

C14662

hexanoyl-CoA

C14677

octanoyl-CoA

C14697

decanoyl-CoA

C14674

lauroyl-CoA

C1177

propanoyl-CoA

C1183

(R)-2-hydroxy-4-methylpentanoyl-CoA

C1175

butanoyl-CoA

C3384

4-methylpent-2-enoyl-CoA

C1337

crotonyl-CoA

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C11219

glycerophosphoserine

C11220

glycerophosphoglycerol

C11222

sn-glycero-3-phosphoethanolamine

C9096

(indol-3-yl)acetate

C1235

methane

C6596

2-iminosuccinate

C6599

2-iminobutanoate

C7118

hydrogen sulfide

C7121

oxygen

C8958

superoxide

C7036

hydrogencarbonate

C7034

hydrogensulfite

C7030

nitrate

C7028

nitrite

C7024

thiosulfate

C7022

selenide

C7016

sulfite

C7006

chloride

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C11023

Fe2+

C11011

Cu2+

C11005

Zn2+

C11006

Co2+

C11009

Mg2+

C11019

Ca2+

C4328

ammonium

C4320

H+

C4326

Na+

C4318

K+

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C6241

1-oleoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C8321

geranyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C9077

(2E,6E)-farnesyl diphosphate

C7676

protoporphyrin IX

C7672

coproporphyrinogen I

C7666

protoporphyrinogen IX

C9865

Mg-protoporphyrin

C7658

uroporphyrinogen-III

C7662

uroporphyrinogen-I

C7632

siroheme

C6624

protoheme

C13354

preQ0

C13422

hydrogen cyanide

C13366

(indole-3-yl)acetonitrile

C8545

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

C8537

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

C1328

L-cysteinylglycine

C1432

D-alanyl-D-serine

C1434

D-alanyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C4606

S-(hydroxymethyl)glutathione

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C3998

methanethiol

C3978

thiocyanate

C12742

7,8-dihydrolumazine

C10988

riboflavin

C12714

7,8-dihydropterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C12696

7,8-dihydromonapterin

C12664

7,8-dihydroneopterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C10609

7,8-dihydropteroate

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C8741

dipicolinate

C2001

hydantoin

C9874

cob(I)alamin

C5221

adenosylcobalamin

C1705

sirohydrochlorin

C9861

cobyrinate

C2311

precorrin-2

C2305

precorrin-1

C2297

precorrin-8x

C9799

cobalt-precorrin-2

C9822

cobalt-precorrin-3

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C9818

cobalt-precorrin-6A

C9842

cobalt-precorrin-6B

C9866

cobalt-precorrin-8

C9813

cobalt-precorrin-5B

C9837

cobalt-precorrin-7

C11263

3,5-dichloro-2-methyl-muconate

C11242

2-(2,4-dichloro-5-oxofuran-2-yl)propanoate

C11232

3-chloro-cis,cis-muconate

C1218

adenosylcobalamin 5'-phosphate

C9807

adenosylcobinamide

C9830

adenosylcobinamide-GDP

C9855

adenosyl-cobinamide phosphate

C9821

cobalt-factor III

C9845

cobalt-sirohydrochlorin

C9869

cob(I)inamide

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9800

adenosylcobyrate

C9823

cob(I)yrinate a,c-diamide

C3865

phosphonoacetaldehyde

C12116

(2-aminoethyl)phosphonate

C10799

DNA with lesion

C8959

monodehydroascorbate radical

C10982

nicotinate

C10994

thiamine

C10986

L-ascorbate