an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

ethanolamine

oxaloacetate

4-methylsalicylate

5-methylsalicylate

CO₂

3-phosphooxypyruvate

pseudouridine 5'-phosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

succinate semialdehyde

urea

phosphoenolpyruvate

N-(5-phosphoribosyl)-anthranilate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

4-hydroxy-2-nonenal

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

orotidine 5'-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

(R)-pantothenate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

coproporphyrinogen III

citrate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

N-acetylglutamyl-phosphate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

preuroporphyrinogen

porphobilinogen

glycerone phosphate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

xanthine

carbonic acid

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

3-hydroxypropanoate

isopentenyl diphosphate

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

L-canavanine

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

arsenite

2-dehydro-3-deoxy-D-gluconate 6-phosphate

hydrogen peroxide

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol aldehyde

indole-3-glycol

isobutanol

3-methylbutanal

3-methylbutanol

2-methylbutanal

2-methylbutanol

2-phenylethanol

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-dehydro-3-deoxy-D-gluconate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

4,5-dihydroxyphthalate

4-carboxy-2-hydroxymuconate-6-semialdehyde

6-chloro-2-hydroxy-4-carboxymuconate-6-semialdehyde

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

α-D-glucosamine 1-phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

cyanate

homogentisate

(2-hydroxyphenyl)acetate

acetoacetate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

3-oxopropanoate

3-ureidopropanoate

β-D-ribosylnicotinate

carbamoyl phosphate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

S-ribosyl-L-homocysteine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

oxalosuccinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

D-gluconate 6-phosphate

O-acetyl-L-serine

4-methyl-3-oxoadipate

4-methyl-3-oxoadipate-enol-lactone

2-dehydropantoate

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

(S)-dihydroorotate

N¹-(5-phospho-β-D-ribosyl)glycinamide

prephytoene diphosphate

N-acetyl-L-glutamate 5-semialdehyde

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

S-acetyldihydrolipoamide

dihydrolipoamide

anthranilate

lipid A disaccharide (E. coli)

lipid X

L-selenocystathionine

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

N-acetyl-L,L-2,6-diaminopimelate

1-piperideine 6-carboxylate

1-piperideine-2-carboxylate

L-pipecolate

5-amino-6-(D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-aminolevulinate

5-phospho-β-D-ribosylamine

quinolinate

glutathione disulfide

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

5-methylcytosine

hydrogen selenide

5-enolpyruvoyl-shikimate 3-phosphate

aminoacetone

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

histidinol

histidinal

cis,cis-muconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-galactonate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

prephenate

4-imidazoleacetate

imidazole acetaldehyde

5-hydroxyindole acetate

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

D-glucurono-6,3-lactone

4-acetamidobutanoate

4-acetamidobutanal

dimethylsulfoniopropanoate

6-phospho D-glucono-1,5-lactone

(4-hydroxyphenyl)acetate

4-oxoglutaramate

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

hydrogenobyrinate

(S)-ureidoglycolate

(R)-1-aminopropan-2-ol

(R)-1-amino-2-propanol O-2-phosphate

hydrogenobyrinate a,c-diamide

N-acetyl-D-muramate 6-phosphate

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

S-formylglutathione

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

N-methylhydantoin

3-dehydroshikimate

(R)-3-(phenyl)lactoyl-CoA

selenophosphate

2,4'-dihydroxyacetophenone

ectoine

(2S)-4-acetamido-2-aminobutanoate

shikimate 3-phosphate

hydroxypyruvate

glycolate

shikimate

4-fumaryl-acetoacetate

4-amino-4-deoxychorismate

(indol-3-yl)pyruvate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

(R)-mandelate

(S)-mandelate

methylsalicylate

salicyl alcohol

L-arogenate

creatinine

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

chloroacetaldehyde

2-chloroethanol

5-dehydro-D-gluconate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

DNA without lesion

4,5-cis-dihydroxy-1,2-dithiacyclohexane

dithioerythritol

urea-1-carboxylate

hydroxylamine

ammonia

estrone 3-sulfate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

norspermidine

carboxynorspermidine

α-ribazole

methylamine

2-keto-L-gulonate

4-aminobutanoate

2-dehydro-3-deoxy-L-arabinonate

L-arabinonate

1-pyrroline-4-hydroxy-2-carboxylate

dialurate

acetyl phosphate

mercuriphenyl acetate

lipid IV_A

pyruvic oxime

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

H₂

urocanate

4-imidazolone-5-propanoate

4-maleyl-acetoacetate

1,4-dihydroxy-2-naphthoate

6-hydroxy-3-succinoyl-pyridine

N-methylmyosmine

2,5-dihydroxypyridine

N-formylmaleamate

maleamate

pseudooxynicotine

4-oxo-4-(3-pyridyl)-butanoate

4-oxo-4-(pyridin-3-yl)butanal

muconolactone

L-histidinol phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2-amino-3-carboxymuconate-6-semialdehyde

(S)-4-amino-5-oxopentanoate

N⁵-carboxyaminoimidazole ribonucleotide

autoinducer 2

2-iminoacetate

2-pyrone-4,6-dicarboxylate

2-hydroxy-4-carboxymuconate semialdehyde hemiacetal

glutathioselenol

selenodiglutathione

3'-ketosucrose

pseudouridine

5-oxo-L-proline

2-maleylacetate

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

α-D-galacturonate 1-phosphate

L-dehydro-ascorbate

(2E,6E)-farnesyl diphosphate

pristanate

cyanophycin primer

cyanophycin primer-L-aspartate

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

L-homocysteine

4-methylphenol

hypoglycin B

carbamate

L-α-amino-ε-keto-pimelate

L-phenylalanine

L-alanine

L-tryptophan

glycine

L-leucine

L-proline

L-isoleucine

L-valine

L-selenocysteine

L-methionine

L-cysteine

L-glutamate

L-aspartate

L-ornithine

L-2,4-diaminobutanoate

L-serine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-arginine

L-lysine

L-glutamine

L-threonine

L-tyrosine

L-cystathionine

L-histidine

L-isoglutamine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-aspartate

N-formimino-L-glutamate

L-citrulline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

hypoglycin A

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-homoserine

L-canaline

S-sulfo-L-cysteine

O-phospho-L-homoserine

meso-diaminopimelate

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

O-acetyl-L-homoserine

cis-4-hydroxy-D-proline

trans-4-hydroxy-L-proline

N-carbamoylglycine

N-acetyl-L-glutamate

sarcosine

S-methyl-L-methionine

D-alanine

D-glutamate

D-aspartate

N-carbamoylsarcosine

creatine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

ATP

ADP

AMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

IMP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

GDP

cyclic-AMP

GTP

dADP

dATP

dGDP

dGTP

adenylo-succinate

XMP

GMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

ppGpp

pppGpp

ITP

IDP

dITP

dIDP

5'-deoxyadenosine

8-oxo-dGMP

8-oxo-dGTP

8-oxo-GMP

8-oxo-GTP

dGMP

dAMP

5,6-dihydrouracil

5,6-dihydrothymine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

adenine

guanine

uracil

cytosine

thymine

preQ₁

NADP⁺

NAD⁺

NADPH

NADH

cyclic di-3',5'-guanylate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCMP

dUMP

dTMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

CDP

UDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

CTP

UTP

CMP

UMP

uridine 3'-monophosphate

cytidine-3'-monophosphate

2'-deoxyuridine

thymidine

2'-deoxycytidine

adenosine

inosine

guanosine

xanthosine

uridine

cytidine

5-fluorouracil

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

D-mannonate

D-gluconate

D-galactonate

L-idonate

L-gluconate

D-idonate

D-altronate

L-gulonate

aldehydo-L-galactonate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3-dehydro-D-glucopyranose

lotaustralin

taxiphyllin

linustatin

neolinustatin

linamarin

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

β-D-fructofuranose

keto-D-fructose

keto-L-sorbose

glycolaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

α-D-galactopyranose

β-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

L-sorbosone

D-glyceraldehyde

D-ribulose

D-xylulose

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

L-glucose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

D-sorbitol 6-phosphate

D-sorbitol

D-ribitol

β-D-cellobiose

maltotriose

melibiose

sucrose

α-maltose

α,α-trehalose

maltotetraose

maltopentaose

maltohexaose

maltoheptaose

stachyose

raffinose

aldehydo-D-galacturonate

salicylaldehyde

4-methylumbelliferone

scopoletin

coumarin

all-trans-retinol

all-trans-retinyl palmitate

sitosterol

stigmasterol

brassicasterol

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

apo-4'-lycopenal

15-cis-phytoene

apo-4'-lycopenoate

solasodine

(S)-nicotine

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

myo-inositol

scyllo-inositol

1D-chiro-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

4-methylcatechol

4-chlorocatechol

catechol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

protocatechuate

3-methylcatechol

3-sulfocatechol

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

2,3-dihydroxybenzoate

ethanol

propan-1-ol

phytol

butan-1-ol

methanol

(2E,6E)-farnesal

fluoroacetaldehyde

methylglyoxal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

acetaldehyde

1-propanal

isobutanal

formaldehyde

1-octanal

butan-1-al

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

diacetyl

a coenzyme-A group

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

pyruvate

2-oxoglutarate

glyoxylate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

5-chloroprotocatechuate

trans-cinnamate

4-aminobenzoate

benzoate

acetate

(R)-pantoate

orotate

5-deoxy-D-glucuronate

5-dehydro-L-gluconate

fluoroacetate

D-tagaturonate

aldehydo-D-glucuronate

(S)-1-pyrroline-5-carboxylate

octanoate

decanoate

palmitate

stearate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

13-sophorosyloxydocosanoate 6',6''-diacetate

sophorosyloxydocosanoate

oleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

linoleate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(15Z)-tetracosenoate

phytenate

(2E,6E)-farnesoate

leukotriene-D4

leukotriene-E4

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(R)-glycerate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

D-glucarate

fumarate

maleate

succinate

(S)-malate

4-tyrosol

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

urate

benzene

coumarinate

ferulate

(+)-taxifolin

(2R,3S,4S)-leucocyanidin

(2R,3S,4S)-leucopelargonidin

(+)-dihydrokaempferol

4-chlorosalicylate

5-chlorosalicylate

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-8

demethylmenaquinol-8

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-11

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-9

demethylmenaquinol-7

menaquinol-8

menaquinol-13

menaquinol-12

menaquinol-11

menaquinol-10

menaquinol-6

menaquinol-9

menaquinol-7

ubiquinol-8

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

hydrogen cyanide

preQ₀

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

7,8-dihydrolumazine

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-phosphate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

FAD

riboflavin

FMN

FADH₂

FMNH₂

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

hydantoin

cob(I)alamin

adenosylcobalamin

sirohydrochlorin

cobyrinate

precorrin-2

precorrin-1

precorrin-6A

precorrin-6B

precorrin-3A

precorrin-5

precorrin-4

precorrin-8x

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

thiamine

nicotinate

nicotinamide

L-ascorbate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxal

coenzyme A

oxidized coenzyme F₄₂₀-1

oxidized coenzyme F₄₂₀-0

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

L-glucono-1,5-lactone

D-galactono-1,4-lactone

L-galactono-1,4-lactone

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

malonyl-CoA

acetyl-CoA

3'-dephospho-CoA

succinyl-CoA

3-hydroxypropanoyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

(E)-glutaconyl-CoA

trans-feruloyl-CoA

isovaleryl-CoA

acryloyl-CoA

phenylacetyl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

octanoyl-CoA

decanoyl-CoA

lauroyl-CoA

hexanoyl-CoA

butanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(E)-cinnamoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

estrone

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

phenylacetate

(+)-7-epi-jasmonate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

cholesterol

3-β-hydroxyandrost-5-en-17-one

stigmasterol 3-O-β-D-glucoside

cholesteryl-β-D-glucoside

β-sitosterol 3-O-β-D-glucoside

brassicasterol 3-O-β-D-glucoside

solasodine 3-O-β-D-glucoside

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

2-chloroacetate

3-chloro-cis,cis-muconate

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

betaine aldehyde hydrate

betaine aldehyde

choline sulfate

choline

agmatine

putrescine

spermidine

N⁸-acetylspermidine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

superoxide

phosphate

triphosphate

diphosphate

chloride

Co²⁺

Hg²⁺

Fe²⁺

Cu²⁺

ammonium

H⁺

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

3-dimethylsulfoniopropionaldehyde

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

thiocyanate

methanethiol

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

monodehydroascorbate radical

hydroxyl radical

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(R)-citramalate

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

Hg⁰

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

protoporphyrinogen IX

siroheme

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobyrate

adenosyl-cobinamide phosphate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cobalt-sirohydrochlorin

cobalt-factor III

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

(R)-3-(phenyl)lactate

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate