an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

urocanate

H₂O

4-imidazolone-5-propanoate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

S-adenosyl 3-(methylsulfanyl)propylamine

CO₂

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

5-phospho-β-D-ribosylamine

citrate

3-deoxy-D-manno-octulosonate 8-phosphate

phosphoenolpyruvate

(S)-2,3,4,5-tetrahydrodipicolinate

hydrogen peroxide

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

enol-phenylpyruvate

prephenate

(S)-dihydroorotate

oxaloacetate

carbamoyl phosphate

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

S-methyl-5'-thioadenosine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

4-maleyl-acetoacetate

homogentisate

acetyl phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

3-methyl-2-oxobutanoate

aminoacetone

6-phospho D-glucono-1,5-lactone

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

porphobilinogen

5-aminolevulinate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-α-D-ribose

glutathione disulfide

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

coproporphyrinogen III

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-demethylubiquinol-6

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

orotidine 5'-phosphate

L-histidinol phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

D-gluconate 6-phosphate

preuroporphyrinogen

nicotinate adenine dinucleotide

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

anthranilate

oxalosuccinate

formamide

urea

L-canavanine

shikimate 3-phosphate

shikimate

3-dehydroquinate

2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate

3-deoxy-D-arabino-heptulosonate 7-phosphate

glycolate

2-phosphoglycolate

4-amino-4-deoxychorismate

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-iminoacetate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-dehydroshikimate

L-β-lysine

ethanolamine

6-amino-2-oxohexanoate

ethylamine

N-ethylglycine

methylamine

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

H₂

hypotaurine

N-ethylsuccinimide

N-ethylmaleimide

2-oxoglutaramate

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

pseudaminate

chloramphenicol

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-hydroxy-2-nonenal

xanthine

CDP-glycerol

4-pyridoxolactone

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

quinolinate

(S)-4-amino-5-oxopentanoate

DNA without lesion

S-ribosyl-L-homocysteine

5-deoxy-α-ribose 1-phosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

2-C-methyl-D-erythritol 4-phosphate

3-amino-1-hydroxyacetone 1-phosphate

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

lipid X

prenyl diphosphate

isopentenyl diphosphate

5-amino-6-(D-ribitylamino)uracil

lipid IV_A

lipid A disaccharide (E. coli)

3-deoxy-α-D-manno-2-octulosonate

itaconate

4-acetamidobutanoate

4-acetamidobutanal

3-hydroxypropanoate

acetoacetate

4-fumaryl-acetoacetate

pseudouridine 5'-phosphate

α-ribazole

1-deoxy-L-glycero-tetrulose 4-phosphate

glycerone phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-ureidopropanoate

urea-1-carboxylate

5-oxo-L-proline

propanoyl phosphate

methylsalicylate

salicyl alcohol

2-oleoylglycerol

tartronate semialdehyde

α-D-glucosamine 1-phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-mercaptopyruvate

4'-phosphopantetheine

2-dehydropantoate

5-carboxymethyl-2-hydroxymuconate

(R)-4'-phosphopantothenate

(R)-pantothenate

isochorismate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

nigerose

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

O-acetyl-L-serine

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1-phosphate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

1,6-anhydro-N-acetyl-β-muramate

2-dehydro-3-deoxy-D-gluconate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

clavaminate

dihydroclavaminate

proclavaminate

amidinoproclavaminate

deoxyamidinoproclavaminate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

5-methylcytosine

4-aminobutanoate

lanthionine

L-selenocystathionine

N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine

glutathionylspermidine

tryptamine

3,4-dihydroxyphenylacetaldehyde

5-methoxyindoleacetaldehyde

5-methoxytryptamine

dethiobiotin

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

3-oxopropanoate

N-(5-phosphoribosyl)-anthranilate

N-acetyl-D-muramate 6-phosphate

succinate semialdehyde

(R)-mandelate

(S)-mandelate

γ-L-glutamyl 5-phosphate

2-keto-L-gulonate

(L-threonylcarbamoyl)adenylate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

7,8-diaminopelargonate

8-amino-7-oxononanoate

pimeloyl-CoA

(S)-2-amino-6-oxohexanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

carbonic acid

(4-hydroxyphenyl)acetate

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

octopamine

(R)-synephrine

hydrogen selenide

histidinal

histidinol

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

1,4-dihydroxy-2-naphthoate

3'-ketosucrose

(S)-ureidoglycolate

(R)-1-amino-2-propanol O-2-phosphate

dialurate

core oligosaccharide-lipid A (E. coli K-12 core type)

5-amino-6-(5-phospho-D-ribitylamino)uracil

N⁵-carboxyaminoimidazole ribonucleotide

(R)-4'-phosphopantothenoyl-L-cysteine

4-amino-2-methyl-5-pyrimidinemethanol

5-amino-6-(5-phospho-D-ribosylamino)uracil

pseudouridine

autoinducer 2

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

3-hydroxy-2-methylpyridine-5-carboxylate

(2Z)-2-(acetamidomethylene)succinate

glutathioselenol

selenodiglutathione

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

5-aminopentanoate

1-piperideine 6-carboxylate

1-piperideine-2-carboxylate

4-oxoglutaramate

ammonia

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

sulfate

hydrogencarbonate

sulfite

selenate

thiosulfate

superoxide

selenite

hydrogensulfite

OH^-

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

H⁺

ammonium

Na⁺

3-(methylsulfanyl)propanal

methionol

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

taurine

L-cysteate

3-sulfopyruvate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

methanethiol

thiocyanate

S-sulfanylglutathione

3-sulfino-L-alanine

chloramphenicol 3-acetate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydroxyl radical

monodehydroascorbate radical

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

1-oleoyl-2-lyso-glycerone phosphate

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-chloroacetate

oxygen

hydrogen sulfide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

hemin

siroheme

protoheme

(Z,Z)-biliverdin-IX α

hydrogen cyanide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosylcobalamin

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobinamide

cob(I)inamide

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

adenosyl-cobinamide phosphate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

ethylphosphate

phenylacetate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

4-[(2Z)-2-(methylimino)ethyl]phenol

4-(2-iminoethyl)phenol

cyanophycin primer

cyanophycin primer-L-aspartate

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-homocysteine

4-methylphenol

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

hypoglycin B

L-2-aminoadipate

L-α-amino-ε-keto-pimelate

L-histidine

L-arginine

L-lysine

L-glutamate

D-glutamate

L-alanine

L-glutamine

glycine

L-serine

L-proline

L-leucine

(R)-β-lysine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

L-threo-3-phenylserine

L-phenylalanine

L-isoleucine

L-valine

L-tryptophan

L-methionine

L-cysteine

L-aspartate

L-tyrosine

L-aspartyl-4-phosphate

L-threonine

L-ornithine

L-asparagine

L,L-diaminopimelate

L-cystathionine

L-isoglutamine

N-carbamoyl-L-aspartate

N-formyl-L-glutamate

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-formimino-L-glutamate

L-citrulline

L-aspartate 4-semialdehyde

L-homoserine

S-adenosyl-L-methionine

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-canaline

hypoglycin A

L-glutamate-5-semialdehyde

L-4-hydroxyglutamate semialdehyde

D-ornithine

L-allo-threonine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-selenomethionine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

O-acetyl-L-homoserine

cis-4-hydroxy-D-proline

trans-4-hydroxy-L-proline

N-acetyl-L-glutamate

N-acetyl-L-methionine

sarcosine

D-alanine

D-lysine

D-proline

D-cysteine

D-phenylalanine

ADP

ATP

AMP

XMP

IMP

GMP

ppGpp

GDP

pppGpp

GTP

5'-deoxyadenosine

dADP

dGDP

1-(5-phospho-β-D-ribosyl)-ATP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

dATP

dGTP

ITP

IDP

dITP

dIDP

2'-deoxyguanosine

2'-deoxyinosine

2'-deoxyadenosine

adenylo-succinate

8-oxo-dGMP

8-oxo-dGTP

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

hypoxanthine

cyclic-GMP

cyclic-AMP

dAMP

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-GMP

8-oxo-GTP

dGMP

isoguanine

5-fluorouracil

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-glucose

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

NAD⁺

NADP⁺

NADH

NADPH

5,6-dihydrouracil

5,6-dihydrothymine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

CMP-pseudaminate

preQ₁

adenine

guanine

uracil

thymine

cytosine

cytidine-3'-monophosphate

uridine 3'-monophosphate

cyclic di-3',5'-guanylate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dTMP

dUMP

dCMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

CDP

UDP

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

CTP

UTP

UMP

CMP

2-hydroxy-dATP

5-hydroxy-CTP

2'-deoxyuridine

2'-deoxycytidine

thymidine

adenosine

xanthosine

inosine

guanosine

uridine

cytidine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

D-gluconate

1-(β-D ribofuranosyl)nicotinamide

β-D-cellobiose

maltotriose

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

sucrose

α-maltose

α,α-trehalose

maltohexaose

maltoheptaose

maltopentaose

maltotetraose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

3-dehydro-D-glucopyranose

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

lotaustralin

linamarin

neolinustatin

linustatin

taxiphyllin

glycerol

D-sorbitol

β-D-fructofuranose

D-glyceraldehyde

glycolaldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

L-sorbosone

D-xylulose

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

keto-L-sorbose

keto-D-fructose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

salicylaldehyde

4-methylumbelliferone

scopoletin

coumarin

geranyl diphosphate

apo-4'-lycopenal

apo-4'-lycopenoate

all-trans-retinol

all-trans-retinyl palmitate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

isopenicillin N

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

1-18:1-2-18:1-phosphatidylethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-palmitoyl-sn-glycero-3-phosphocholine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

ethanol

phytol

propan-1-ol

butan-1-ol

methanol

myo-inositol

1-amino-1-deoxy-scyllo-inositol

scyllo-inosose

1D-myo-inositol 3-monophosphate

D-myo-inositol (1,4)-bisphosphate

D-myo-inositol (1,3,4,5)-tetrakisphosphate

D-myo-inositol (1,3,4)-trisphosphate

D-myo-inositol (1,4,5)-trisphosphate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

dopamine

(R)-adrenaline

(R)-noradrenaline

3,4-dihydroxyphenylacetate

fluoroacetaldehyde

methylglyoxal

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

acetaldehyde

isobutanal

1-propanal

formaldehyde

1-octanal

butan-1-al

diacetyl

a coenzyme-A group

octanoate

decanoate

pyruvate

acetate

formate

propanoate

butanoate

(R)-lactate

(S)-lactate

(2R,3S)-2-methylisocitrate

(R)-3-hydroxybutanoate

cis-aconitate

(2S,3S)-2-methylcitrate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

(S)-malate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

benzoate

orotate

(R)-pantoate

5-chloro-5-deoxy-D-ribonate

allantoate

fluoroacetate

(S)-1-pyrroline-5-carboxylate

pristanate

palmitate

stearate

dinor-12-oxo-phytodienoate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

linoleate

oleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

4-tyrosol

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-hydroxybenzoate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

urate

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-10

demethylmenaquinol-7

demethylmenaquinol-6

demethylmenaquinol-8

menaquinol-7

menaquinol-6

menaquinol-8

ubiquinol-9

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-10

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

metanephrine

normetanephrine

coumarinate

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

tyramine

2-phenylethylamine

serotonin

preQ₀

acrylonitrile

(indole-3-yl)acetonitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

5,6,7,8-tetrahydromonapterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin triphosphate

7,8-dihydropteroate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

FAD

FMN

riboflavin

FMNH₂

reduced riboflavin

FADH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

sirohydrochlorin

precorrin-1

precorrin-2

nicotinate

nicotinamide

L-ascorbate

thiamine

pyridoxal

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine

4-pyridoxate

coenzyme A

glycine betaine

(R)-NADHX

(S)-NADHX

malonyl-CoA

acetyl-CoA

succinyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

itaconyl-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

isobutanoyl-CoA

dihomo γ-linolenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-methylacetoacetyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(S)-3-aminobutanoyl-CoA

(E)-glutaconyl-CoA

glutaryl-CoA

2-methylbutanoyl-CoA

phenylacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxooctadecanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

hexadecanedioyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

2-hydroxyphytanoyl-CoA

phytanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

hexanoyl-CoA

butanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

D-glucono-1,5-lactone

ethene

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

cholest-4-en-3-one

3-oxocholest-4,24-dien-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxochol-4,22-dien-24-oyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxo-4,17-pregnadiene-20-carboxyl-CoA

17-hydroxy-3-oxo-4-pregnane-20-carboxyl-CoA

(25S)-26-hydroxycholest-4-en-3-one

(25S)-26-oxocholest-4-en-3-one

cholesterol

cholest-5-en-3-one

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

(S)-(+)-allantoin

acetamide

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

4-[(E)-2-(methylamino)ethenyl]phenol

4-[(Z)-2-aminoethenyl]phenol

betaine aldehyde

choline

betaine aldehyde hydrate

agmatine

spermidine

putrescine

cadaverine

N-acetylputrescine