an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

malonate

2-iminoacetate

γ-glutamyl-L-putrescine

vanillin

4-hydroxy-2-nonenal

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

2-dehydro-3-deoxy-D-galactonate

carbonic acid

2-aminoacetaldehyde

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-(α-hydroxyethyl)thiamine diphosphate

ADP-L-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

ADP-D-glycero-β-D-manno-heptose

carbon monoxide

2-aminomalonate semialdehyde

hydrogenobyrinate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

acetyl phosphate

isopentenyl diphosphate

quinolinate

2,5-dioxopentanoate

histidinal

histidinol

hydroxypyruvate

homogentisate

4-maleyl-acetoacetate

O-ureido-L-homoserine

lipid X

3-deoxy-D-manno-octulosonate 8-phosphate

2-C-methyl-D-erythritol 4-phosphate

S-formylglutathione

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

3-demethylubiquinol-6

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

tartronate semialdehyde

selenophosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

hydrogenobyrinate a,c-diamide

5-dehydro-4-deoxy-D-glucarate

glutathione disulfide

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

3-deoxy-α-D-manno-2-octulosonate

lipid A disaccharide (E. coli)

lipid IV_A

oxalosuccinate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

acetoacetate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

5-enolpyruvoyl-shikimate 3-phosphate

(S)-ureidoglycolate

enol-phenylpyruvate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(R)-1-amino-2-propanol O-2-phosphate

hydrogen selenide

O-acetyl-L-serine

citrate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

4-amino-4-deoxychorismate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(2S)-2-isopropylmalate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

L-histidinol phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-dehydropantoate

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(S)-4-amino-5-oxopentanoate

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

ethanolamine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

thiamine phosphate

thiamine diphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

(R)-pantothenate

N-acetyl-L-glutamate 5-semialdehyde

N-(5-phosphoribosyl)-anthranilate

anthranilate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

dethiobiotin

pimeloyl-CoA

glycerone phosphate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

carbamoyl phosphate

4'-phosphopantetheine

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

canavaninosuccinate

L-canavanine

L-arginino-succinate

xanthine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

N-acetylglutamyl-phosphate

orotidine 5'-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(S)-dihydroorotate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

hydrogen peroxide

4-aminobutanoate

succinate semialdehyde

oxaloacetate

phosphoenolpyruvate

N-carbamoylputrescine

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

prephenate

urocanate

4-imidazolone-5-propanoate

shikimate

shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

coproporphyrinogen III

prenyl diphosphate

nicotinate adenine dinucleotide

urea

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-dehydroquinate

3-dehydroshikimate

CO₂

H₂O

hydroxyatrazine

N-isopropylammelide

ethylamine

3-oxopropanoate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

ammonia

4-oxoglutaramate

1-piperideine 6-carboxylate

α-D-galacturonate 1-phosphate

isopropylamine

formamide

4-amino-2-methyl-5-pyrimidinemethanol

S-ribosyl-L-homocysteine

autoinducer 2

2-amino-3-carboxymuconate-6-semialdehyde

selenodiglutathione

glutathioselenol

core oligosaccharide-lipid A (E. coli K-12 core type)

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

methyloxaloacetate

L-xylo-hex-3-ulono-1,4-lactone

2-dehydro-6-phospho-D-gluconate

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

3'-ketosucrose

(R)-synephrine

octopamine

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-oxo-L-proline

dialurate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

N-ethylammelide

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

H₂

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-carboxyhex-2-enoyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

cyclohex-1-ene-1-carbonyl-CoA

4-(γ-L-glutamylamino)butanal

4-(γ-L-glutamylamino)butanoate

S-Inosyl-L-homocysteine

4-fumaryl-acetoacetate

3-phosphonopyruvate

2-hydroxy-cyclohexane-1-carbonyl-CoA

2-ketocyclohexane-1-carbonyl-CoA

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

2-oleoylglycerol

(S)-2,3,4,5-tetrahydrodipicolinate

4-methyl-3-oxoadipate

deethylsimazine

N-ethylammeline

α-D-galactosyl-diphosphoundecaprenol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

β-D-ribosylnicotinate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

5-methylcytosine

isoquinoline

isoquinolin-2(1H)-one

N,N-dimethyl-1,4-phenylenediamine

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

(4S)-4-hydroxy-2-oxoheptanedioate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

muconolactone

(+)-muconolactone

cis,cis-muconate

(4-hydroxyphenyl)acetate

L-selenocystathionine

2-keto-L-gulonate

2-maleylacetate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

2-dehydro-3-deoxy-D-gluconate

L-quinate

carboxynorspermidine

norspermidine

(S)-2-amino-6-oxohexanoate

lipid II_A

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

L-gulono-1,4-lactone

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

α-ribazole

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

propanoyl phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

trimethylamine

trimethylamine N-oxide

dimethyl sulfoxide

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

urea-1-carboxylate

(2-hydroxyphenyl)acetate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(E)-3-(methoxycarbonyl)pent-2-enedioate

DNA without lesion

N-acetyl-D-muramate 6-phosphate

2-phosphoglycolate

glycolate

5-hydroxytryptophol

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-methoxytryptamine

5-methoxyindoleacetaldehyde

3,4-dihydroxyphenylacetaldehyde

tryptamine

salicyl alcohol

methylsalicylate

methylamine

(2E,6E)-farnesyl diphosphate

pristanate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminosuccinate

2-iminobutanoate

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminopropanoate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

adenosylcobalamin

cob(I)alamin

Mg-protoporphyrin

cobalt-precorrin-6B

cobalt-precorrin-6A

cob(II)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-5B

cobalt-precorrin-4

cobalt-precorrin-5A

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(II)yrinate c-monoamide

cobyrinate

protoheme

hydrogen cyanide

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

siroheme

(Z,Z)-biliverdin-IX α

S⁰

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

superoxide

nitric oxide

monodehydroascorbate radical

hydroxyl radical

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

S-(hydroxymethyl)glutathione

S-methyl-L-methionine

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

methanethiol

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

taurine

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrate

hydrogensulfite

hydrogencarbonate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

H⁺

ammonium

K⁺

Co²⁺

Mg²⁺

Fe²⁺

Cd²⁺

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

choline sulfate

(2Z)-2-aminobut-2-enoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

aniline

2-aminoprop-2-enoate

agmatine

N-acetylputrescine

putrescine

2-phenylethylamine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

serotonin

ferribactin

pyoverdine I

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

allantoate

acetamide

(S)-(+)-allantoin

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

ethene

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

testosterone

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

5α-androstane-3,17-dione

androsterone

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(E)-glutaconyl-CoA

glutaryl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3'-dephospho-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

2-methylbutanoyl-CoA

phenylacetyl-CoA

benzoyl-CoA

trans-feruloyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

dihomo γ-linolenoyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

L-homoserine lactone

PAI-1

HAI-1

PAI-1-2

VAI-1

VAI-1-2

AAI-1

D-glucono-1,5-lactone

FAD

FMNH₂

FMN

FADH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

nicotinate

riboflavin

thiamine

L-ascorbate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

menadione

all-trans-retinol

L-homocysteine

4-methylphenol

(S)-1-pyrroline-5-carboxylate

precorrin-6B

precorrin-7

precorrin-3B

precorrin-8x

precorrin-1

precorrin-2

precorrin-3A

precorrin-4

precorrin-5

precorrin-6A

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin triphosphate

7,8-dihydropterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

5,6,7,8-tetrahydromonapterin

guanine

adenine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

inosine

xanthosine

guanosine

hypoxanthine

dIMP

dGMP

dAMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

GMP

AMP

IMP

XTP

ITP

GTP

ATP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCMP

dTMP

UDP

UTP

dUDP

dTDP

dTTP

dCDP

dCTP

CDP

uracil

CTP

dUTP

dUMP

orotate

cytosine

uridine 3'-monophosphate

cytidine-3'-monophosphate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-galactosamine

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

thymine

UMP

CMP

isoguanine

preQ₁

coumarin

scopoletin

4-methylumbelliferone

acrylonitrile

preQ₀

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

(indole-3-yl)acetonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

4-hydroxybenzoate

salicylaldehyde

cyanuric acid

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

urate

4-tyrosol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

atrazine

3-methoxy-4-hydroxyphenylglycol

normetanephrine

metanephrine

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

2,3-dihydroxybenzoate

catechol

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

(R)-noradrenaline

(R)-adrenaline

3,4-dihydroxyphenylglycolaldehyde

dopamine

coumarinate

ferulate

vanillate

salicylate

4-aminobenzoate

benzoate

3-oxo-dodecanoate

3-oxooctanoate

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

(S)-3-amino-2-methylpropanoate

L-leucine

L-proline

L-glutamine

glycine

L-alanine

D-glutamate

L-glutamate

L-lysine

L-histidine

L-arginine

L-aspartate

L-asparagine

L-tyrosine

L-threonine

L-cysteine

L-phenylalanine

L-tryptophan

D-alanine

D-cysteine

D-proline

seleno-L-homocysteine

L-selenomethionine

L-aspartyl-4-phosphate

L-saccharopine

sarcosine

(2S, 3S)-3-methylaspartate

N⁵-formyl-N⁵-hydroxy-L-ornithine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N⁵-hydroxy-L-ornithine

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-4-hydroxyglutamate semialdehyde

hypoglycin A

1-aminocyclopropane-1-carboxylate

O-succinyl-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-allo-threonine

L-methionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-isoglutamine

L-cystathionine

chorismate

fumarate

succinate

(S)-malate

D-galactarate

D-glucarate

3-carboxy-cis,cis-muconate

cis-aconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

trans-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

pyruvate

acetate

formate

propanoate

butanoate

octanoate

decanoate

3-oxoadipate

3-oxohexanoate

(15Z)-tetracosenoate

oleate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

stearate

palmitate

D-gluconate

(R)-pantoate

5-deoxy-D-glucuronate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

butan-1-al

formaldehyde

acetaldehyde

1-propanal

isobutanal

(S)-lactaldehyde

phytenal

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-ribopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

methanol

ethanol

butan-1-ol

propan-1-ol

1-octanol

phytol

glycerol

galactitol

D-sorbitol

D-mannitol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

di-trans,octa-cis-undecaprenyl phosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

all-trans-octaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

zeinoxanthin

α-carotene

3-octaprenyl-4-hydroxybenzoate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

α-Kdo-(2→6)-lipid IV_A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

4'-α-L-Ara4N-α-Kdo-(2->4)-α-KDO-(2->6)-lipid IV_A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

vanillylamine

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

α,α-trehalose

β-D-cellobiose

6_G-kestotriose

1,1-kestotetraose

1-kestotriose

1,6-kestotetraose

6-kestotriose

6,6-kestotetraose

keto-L-sorbose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

β-D-fructofuranose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3-dehydro-D-glucopyranose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-mannuronate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-galactonate

aldehydo-L-galactonate

L-gulonate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

ppGpp

5'-deoxyadenosine

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

8-oxo-GTP

8-oxo-dGTP

pppGpp

guanosine 3'-monophosphate

adenosine 3'-monophosphate

5-fluorocytosine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B