an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

ammonia

1-pyrroline

4-oxoglutaramate

1-piperideine 6-carboxylate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

formamide

S-ribosyl-L-homocysteine

autoinducer 2

selenodiglutathione

glutathioselenol

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

N⁵-carboxyaminoimidazole ribonucleotide

N-carbamoyl-2-oxoglycine

oxamate

2-amino-3-carboxymuconate-6-semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

2-dehydro-6-phospho-D-gluconate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

protoanemonin

4-oxo-4-(pyridin-3-yl)butanal

4-oxo-4-(3-pyridyl)-butanoate

pseudooxynicotine

N-methylmyosmine

6-hydroxy-3-succinoyl-pyridine

2,5-dihydroxypyridine

N-formylmaleamate

maleamate

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

creatinine

2-hydroxy-4-carboxymuconate semialdehyde hemiacetal

2-pyrone-4,6-dicarboxylate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

H₂

dialurate

2-dehydro-3-deoxy-D-gluconate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

core oligosaccharide-lipid A (E. coli K-12 core type)

N-carbamoylputrescine

ADP-L-glycero-β-D-manno-heptose

1-deoxy-L-glycero-tetrulose 4-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

N-acetyl-D-muramate 6-phosphate

salicyl alcohol

methylsalicylate

palmitaldehyde

(2E)-hexadecenal

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

(S)-2,3,4,5-tetrahydrodipicolinate

S-formylglutathione

α-ribazole

2-phosphoglycolate

L-arogenate

3-hydroxybenzaldehyde

benzoylsuccinyl-CoA

prephenate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

β-D-ribosylnicotinate

(E)-3-(methoxycarbonyl)pent-2-enedioate

tryptamine

1,3-propanediol

3-hydroxypropanal

(S)-mandelate

(R)-mandelate

N,N-dimethyl-1,4-phenylenediamine

(S)-2-amino-6-oxohexanoate

carboxynorspermidine

norspermidine

2-oleoylglycerol

nigerose

N-ethylmaleimide

N-ethylsuccinimide

isopropylamine

phthalate

2,2'-disulfonyl azobenzene

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

vanillin

carbonic acid

(2-hydroxyphenyl)acetate

5-oxo-L-proline

L-quinate

2-keto-L-gulonate

isoquinoline

isoquinolin-2(1H)-one

cis,cis-muconate

muconolactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

glycolate

methylamine

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

4-methylsalicylate

5-methylsalicylate

4-methyl-3-oxoadipate

oxalosuccinate

DNA without lesion

4-hydroxy-2-nonenal

2-maleylacetate

(S)-ureidoglycolate

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

L-selenocystathionine

(L-threonylcarbamoyl)adenylate

urea-1-carboxylate

carbon monoxide

α-D-glucosamine 1-phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

hydrogenobyrinate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

ADP-D-glycero-β-D-manno-heptose

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-iminoacetate

4-fumaryl-acetoacetate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

L-canavanine

preuroporphyrinogen

4-aminobutanoate

succinate semialdehyde

2-aminoacetaldehyde

D-erythro-imidazole-glycerol-phosphate

pimeloyl-CoA

dethiobiotin

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

anthranilate

thiamine diphosphate

ethanolamine

3-oxopropanoate

isopentenyl diphosphate

hydroxypyruvate

acetyl phosphate

quinolinate

selenophosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

histidinal

histidinol

imidazole acetol-phosphate

L-histidinol phosphate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

hydrogen peroxide

lipid X

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

hydrogen selenide

O-acetyl-L-serine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(R)-1-amino-2-propanol O-2-phosphate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

3-demethylubiquinol-6

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

3-deoxy-D-manno-octulosonate 8-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

lipid A disaccharide (E. coli)

lipid IV_A

3-deoxy-α-D-manno-2-octulosonate

4-amino-4-deoxychorismate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

N-(5-phosphoribosyl)-anthranilate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

6-chloro-2-hydroxy-4-carboxymuconate-6-semialdehyde

4-carboxy-2-hydroxymuconate-6-semialdehyde

hydroxyatrazine

N-isopropylammelide

ethylamine

urea

5-amino-6-(D-ribitylamino)uracil

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

porphobilinogen

hydrogenobyrinate a,c-diamide

4-methyl-2-oxopentanoate

acetoacetate

enol-phenylpyruvate

5-dehydro-4-deoxy-D-glucarate

2,5-dioxopentanoate

3-dehydroshikimate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

glutathione disulfide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

6-phospho D-glucono-1,5-lactone

citrate

tartronate semialdehyde

phosphoenolpyruvate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

N-acetyl-L-glutamate 5-semialdehyde

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

homogentisate

4-maleyl-acetoacetate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-dehydropantoate

(R)-pantothenate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

nicotinate adenine dinucleotide

prenyl diphosphate

glycerone phosphate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

carbamoyl phosphate

(S)-dihydroorotate

4-imidazolone-5-propanoate

urocanate

coproporphyrinogen III

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate

shikimate 3-phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

xanthine

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

N-acetylglutamyl-phosphate

orotidine 5'-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

oxaloacetate

CO₂

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

cobalt-precorrin-5A

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cob(II)yrinate c-monoamide

cobyrinate

adenosylcobyrate

adenosylcobalamin 5'-phosphate

Mg-protoporphyrin

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cob(II)yrinate a,c-diamide

protoheme

hydrogen cyanide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

(Z,Z)-biliverdin-IX α

hydrogen sulfide

oxygen

S⁰

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

Reactive Blue 5

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-ureidoglycine

1-oleoyl-2-lyso-glycerone phosphate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

monodehydroascorbate radical

hydroxyl radical

superoxide

nitric oxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

dimethyl sulfide

S-(hydroxymethyl)glutathione

methionol

3-(methylsulfanyl)propanal

S-methyl-L-methionine

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

taurine

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

(R)-S-lactoylglutathione

3-sulfino-L-alanine

Fe³⁺

ammonium

K⁺

H⁺

Mg²⁺

Fe²⁺

Ni²⁺

Co²⁺

trimethyl sulfonium

sulfate

OH^-

hydrogensulfite

selenite

nitrite

nitrate

selenide

selenate

thiosulfate

sulfite

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

aniline

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

4-aminobutanal

putrescine

betaine aldehyde hydrate

choline sulfate

glycine betaine

choline

betaine aldehyde

2-phenylethylamine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

serotonin

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

3-chloro-cis,cis-muconate

4-chlorosalicylate

5-chlorosalicylate

4-chlorocatechol

allantoate

acetamide

(S)-(+)-allantoin

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

nicotinamide

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

estrone

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-β-hydroxyandrost-5-en-17-one

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

2-methylbutanoyl-CoA

glutaryl-CoA

(E)-glutaconyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

phenylacetyl-CoA

trans-feruloyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

dihomo γ-linolenoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

3'-dephospho-CoA

acetyl-CoA

malonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

FADH₂

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

L-ascorbate

thiamine

nicotinate

riboflavin

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-5

precorrin-4

precorrin-3B

precorrin-7

precorrin-8x

precorrin-1

precorrin-2

precorrin-3A

precorrin-6B

precorrin-6A

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

xanthosine

adenosine

inosine

hypoxanthine

dGMP

dAMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

IMP

XMP

AMP

GMP

ITP

GTP

ATP

dTDP

dUDP

UTP

dTTP

dTMP

dCTP

dCMP

dCDP

CDP

UDP

5,6-dihydrothymine

5,6-dihydrouracil

uracil

CTP

dUTP

dUMP

orotate

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

thymine

UMP

CMP

isoguanine

preQ₁

baicalein

6,7-dehydrobaicalein

coumarin

scopoletin

4-methylumbelliferone

acrylonitrile

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

preQ₀

(indole-3-yl)acetonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

salicylaldehyde

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

cyanuric acid

4-tyrosol

urate

4-hydroxybenzoate

atrazine

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

4-methylphenol

L-dopa

dopamine

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

4-methylcatechol

catechol

protocatechuate

coumarinate

ferulate

vanillate

salicylate

5-chloroprotocatechuate

3-hydroxybenzoate

benzoate

4-aminobenzoate

(3E)-2-oxohex-3-enedioate

chorismate

maleate

succinate

L-aspartate

fumarate

(S)-malate

D-galactarate

D-glucarate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

trans-aconitate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

3-carboxy-cis,cis-muconate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

propanoate

formate

acetate

pyruvate

butanoate

decanoate

octanoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

γ-linolenate

linoleate

di-homo-γ-linolenate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

stearate

pristanate

palmitate

leukotriene-E4

leukotriene-D4

D-gluconate

(R)-pantoate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

(R)-4-hydroxy-4-methyl-2-oxoglutarate

L-α-amino-ε-keto-pimelate

L-serine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

L-leucine

L-proline

glycine

L-alanine

L-glutamine

D-glutamate

L-glutamate

N^ω-hydroxy-L-arginine

L-lysine

L-histidine

L-arginine

L-cysteine

L-asparagine

L-tyrosine

L-threonine

L-tryptophan

L-phenylalanine

D-proline

D-alanine

L-saccharopine

D-nopaline

S-sulfanyl-L-cysteine

seleno-L-homocysteine

L-selenomethionine

L-aspartyl-4-phosphate

sarcosine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

5-hydroxy-L-tryptophan

O-acetyl-L-homoserine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

L-4-hydroxyglutamate semialdehyde

1-aminocyclopropane-1-carboxylate

L-cystine

hypoglycin A

L-canaline

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-homocysteine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-isoglutamine

L-cystathionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

a coenzyme-A group

methylglyoxal

diacetyl

(S)-acetoin

(R)-acetoin

3-(N-morpholino)propanal

glycolaldehyde

1-propanal

isobutanal

1-octanal

formaldehyde

butan-1-al

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

propan-1-ol

ethanol

methanol

phytol

glycerol

D-sorbitol

3,5-cyclohexadiene-1,2-diol-1-carboxylate

(S,S)-2,3-butanediol

(R,R)-2,3-butanediol

myo-inositol

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

apo-4'-lycopenal

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid A

heptosyl-Kdo₂-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

betalamate

miraxanthin V

(S)-nicotine

betanidin

betanidin quinone

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

α,α-trehalose

β-D-cellobiose

neoagarobiose

neoagarotetraose

neoagarohexaose

agaropentaose

agarotriose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

keto-L-sorbose

keto-D-fructose

β-D-fructofuranose

3,6-anhydro-α-L-galactopyranose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannuronate

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

8-oxo-GTP

8-oxo-dGTP

5'-deoxyadenosine

ppGpp

pppGpp

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-AMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

2-iminosuccinate

2-iminobutanoate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

(3R)-3-hydroxypentanoyl-CoA

gallate

(+)-muconolactone

all-trans-nonaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate