an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

pseudouridine 5'-phosphate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

3-(2,3-dihydroxyphenyl)propanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

naphthalene-1,2-diol

trans-O-hydroxybenzylidenepyruvate

5-methylsalicylate

4-methylsalicylate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(2Z,4E)-2-aminomuconate

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

2-oxopent-4-enoate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

(S)-4-hydroxy-2-oxopentanoate

4-methyl-3-oxoadipate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

dimethylsulfoniopropanoate

D-glucurono-6,3-lactone

propynoate

prop-2-ynal

5-hydroxyindole acetate

4-imidazoleacetate

imidazole acetaldehyde

(S)-2-amino-6-oxohexanoate

norspermidine

carboxynorspermidine

dimethyl sulfoxide

trimethylamine N-oxide

trimethylamine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

5-methylcytosine

3-hydroxypropanoate

carbon monoxide

ADP-D-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1-phosphate

ADP-L-glycero-β-D-manno-heptose

2-(α-hydroxyethyl)thiamine diphosphate

prephytoene diphosphate

L-gulono-1,4-lactone

2-iminoacetate

hydroxylamine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

malonate

5-phospho-α-D-ribose 1,2-cyclic phosphate

α-D-ribose-1-methylphosphonate 5-phosphate

3-keto-β-D-galactose

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

pyruvic oxime

2-dehydro-6-phospho-D-gluconate

2-keto-D-gluconate

2-dehydro-3-deoxy-D-gluconate

3'-ketosucrose

core oligosaccharide-lipid A (E. coli K-12 core type)

octopamine

dialurate

(4-hydroxyphenyl)acetate

(R)-synephrine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

pseudouridine

adipate

6-oxohexanoate

6-aminohexanoate cyclic dimer

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

N-ethylammelide

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

4-amino-2-methyl-5-pyrimidinemethanol

isopropylamine

autoinducer 2

S-ribosyl-L-homocysteine

glutathioselenol

selenodiglutathione

1-piperideine 6-carboxylate

4-oxalocrotonate

bisorganyltrisulfane

5-hydroxyindole thiazolidine carboxylate

picolinate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

H₂O

hydrogen peroxide

N-carbamoylputrescine

selenophosphate

oxaloacetate

CO₂

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

phosphoenolpyruvate

orotidine 5'-phosphate

N-acetylglutamyl-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

L-arginino-succinate

L-canavanine

canavaninosuccinate

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

coproporphyrinogen III

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

anthranilate

N-(5-phosphoribosyl)-anthranilate

S-adenosyl 3-(methylsulfanyl)propylamine

N-acetyl-L-glutamate 5-semialdehyde

(R)-pantothenate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

thiamine diphosphate

thiamine phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

acetoacetate

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

γ-L-glutamyl 5-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

histidinol

histidinal

L-histidinol phosphate

imidazole acetol-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

hydroxypyruvate

acetyl phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

enol-phenylpyruvate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-dehydro-3-deoxy-D-gluconate 6-phosphate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

lipid IV_A

lipid A disaccharide (E. coli)

3-deoxy-α-D-manno-2-octulosonate

4-amino-4-deoxychorismate

5-enolpyruvoyl-shikimate 3-phosphate

S-methyl-5'-thioadenosine

(S)-dihydroorotate

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

shikimate 3-phosphate

3-demethylubiquinol-6

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-deoxy-α-ribose 1-phosphate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

5-phospho-β-D-ribosylamine

nicotinate adenine dinucleotide

citrate

glycerone phosphate

2-dehydropantoate

adenosine 3',5'-bisphosphate

glutathione disulfide

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

oxalosuccinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

O-acetyl-L-serine

hydrogen selenide

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

lipid X

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

α-ribazole 5'-phosphate

β-nicotinate D-ribonucleotide

5,6-dimethylbenzimidazole

(R)-1-amino-2-propanol O-2-phosphate

O-ureido-L-homoserine

carbamoyl phosphate

3-methyl-2-oxobutanoate

ethylamine

N-isopropylammelide

hydroxyatrazine

urea

(S)-ureidoglycolate

tartronate semialdehyde

(S)-4-amino-5-oxopentanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

3-dehydroshikimate

α-D-glucosamine 1-phosphate

cyanate

quinolinate

ethanolamine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(S)-3-methyl-2-oxopentanoate

S-acetyldihydrolipoamide

dihydrolipoamide

dethiobiotin

7,8-diaminopelargonate

8-amino-7-oxononanoate

pimeloyl-CoA

5-dehydro-4-deoxy-D-glucarate

2,5-dioxopentanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

4'-phosphopantetheine

D-erythro-imidazole-glycerol-phosphate

shikimate

4-hydroxy-2-nonenal

carbonic acid

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

4-acetamidobutanoate

4-acetamidobutanal

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

vanillin

H₂

succinate semialdehyde

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-carboxy-2,5-dihydro-5-oxofuran-2-acetate

ectoine

(2S)-4-acetamido-2-aminobutanoate

(2-hydroxyphenyl)acetate

homogentisate

2-oleoylglycerol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

2-keto-L-gulonate

4-fumaryl-acetoacetate

glycolate

xanthine

3-oxopropanoate

4-aminobutanoate

2-phosphoglycolate

N-acetyl-D-muramate 6-phosphate

DNA without lesion

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

muconolactone

4-maleyl-acetoacetate

methylsalicylate

salicyl alcohol

2-maleylacetate

(S)-2,3,4,5-tetrahydrodipicolinate

urea-1-carboxylate

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

propanoyl phosphate

tryptamine

3,4-dihydroxyphenylacetaldehyde

5-methoxyindoleacetaldehyde

5-methoxytryptamine

methylamine

(L-threonylcarbamoyl)adenylate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

β-D-fructose 2,6-bisphosphate

prephenate

N-ethylammeline

deethylsimazine

nigerose

(2R,3S)-3-methylmalate

citraconate

5-oxo-L-proline

3-oxo-3-phenylpropanoyl-CoA

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

ammonia

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

creatinine

cis,cis-muconate

(+)-muconolactone

6-aminohexanoate

6-aminohexanoate linear dimer

formamide

3-mercaptopyruvate

α-ribazole

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

(2E,6E)-farnesol

(2E,6E)-farnesyl diphosphate

pristanate

L-α-amino-ε-keto-pimelate

carbamate

L-methionine

L-cysteine

glycine

L-isoleucine

L-alanine

L-phenylalanine

L-proline

L-tryptophan

L-selenocysteine

L-valine

L-leucine

L-glutamate

L-glutamine

L-aspartyl-4-phosphate

L-aspartate

L-2,4-diaminobutanoate

L-ornithine

L-threonine

L,L-diaminopimelate

L-arginine

L-tyrosine

L-serine

L-histidine

L-lysine

L-asparagine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

L-citrulline

L-4-hydroxyglutamate semialdehyde

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

3-sulfino-L-alanine

O-succinyl-L-homoserine

1-aminocyclopropane-1-carboxylate

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-saccharopine

L-selenomethionine

seleno-L-homocysteine

O-acetyl-L-homoserine

N-acetyl-L-glutamate

N-acetyl-L-methionine

sarcosine

L-threonine 3-O-phosphate

3-phospho-L-serine

D-methionine

D-glutamate

D-alanine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

dITP

dIDP

IDP

XTP

dIMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

ADP

ATP

AMP

GMP

XMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

GDP

cyclic-AMP

GTP

dADP

dATP

dGDP

dGTP

5'-deoxyadenosine

adenylo-succinate

dAMP

dGMP

IMP

ITP

2'-deoxyguanosine

guanosine 3'-monophosphate

adenosine 3'-monophosphate

hypoxanthine

2'-deoxyinosine

2'-deoxyadenosine

ppGpp

pppGpp

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

adenine

guanine

thymine

cytosine

uracil

preQ₁

cytidine-3'-monophosphate

uridine 3'-monophosphate

cyclic di-3',5'-guanylate

dTMP

dUMP

dCMP

dTDP

dCDP

dUDP

dUTP

dCTP

dTTP

UDP

CDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

CTP

UTP

CMP

UMP

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

NADP⁺

NAD⁺

NADPH

NADH

thymidine

2'-deoxyuridine

2'-deoxycytidine

xanthosine

guanosine

adenosine

inosine

cytidine

uridine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-fluorouracil

5-fluorocytosine

L-gulonate

D-gluconate

D-mannonate

1-(β-D ribofuranosyl)nicotinamide

3'-ketolactose

3-dehydro-D-glucopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

lotaustralin

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

linamarin

neolinustatin

linustatin

taxiphyllin

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

sucrose 6^F-phosphate

N,N'-diacetylchitobiose 6'-phosphate

β-D-cellobiose 6'-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

β-D-fructofuranose

keto-L-sorbose

glycolaldehyde

aldehydo-D-ribose

β-D-ribopyranose

β-D-ribofuranose

α-D-ribofuranose

α-D-galactopyranose

β-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

L-sorbosone

D-glyceraldehyde

L-glyceraldehyde

D-xylulose

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-β-D-glucosamine

glycerol

D-sorbitol

galactitol

D-mannitol

D-arabinitol

XXXG xyloglucan oligosaccharide

β-D-cellobiose

maltotriose

α-Kdo-(2→6)-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid IV_A

heptosyl-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

allolactose

sucrose

α-lactose

α,α-trehalose

maltohexaose

maltoheptaose

maltopentaose

maltotetraose

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

salicylaldehyde

4-methylumbelliferone

scopoletin

coumarin

all-trans-retinol

all-trans-retinyl palmitate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

geranyl diphosphate

zeaxanthin bis(β-D-glucoside)

zeaxanthin-β-D-glucoside

apo-4'-lycopenal

β-zeacarotene

β-carotene

myxol

plectaniaxanthin

all-trans-phytoene

15-cis-phytoene

all-trans phytofluene

zeaxanthin

β-cryptoxanthin

hydroxy-β-zeacarotene

apo-4'-lycopenoate

vanillylamine

(2E,5E)-dodeca-2,5-dienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-2-lyso-glycerone phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

myo-inositol

1D-myo-inositol 3-monophosphate

phytate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

3,5-cyclohexadiene-1,2-diol-1-carboxylate

hydroquinone

4-chlorocatechol

4-methylcatechol

3-sulfocatechol

3-methylcatechol

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

protocatechuate

2,3-dihydroxybenzoate

catechol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

dopamine

(R)-adrenaline

(R)-noradrenaline

butan-1-ol

ethanol

phytol

propan-1-ol

methanol

(2E,6E)-farnesal

methylglyoxal

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

phytenal

(S)-lactaldehyde

butan-1-al

acetaldehyde

formaldehyde

isobutanal

1-propanal

1-octanal

caldariellaquinone

diacetyl

a coenzyme-A group

pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

trans-cinnamate

salicylate

4-aminobenzoate

benzoate

acetate

orotate

(R)-pantoate

allantoate

(S)-1-pyrroline-5-carboxylate

butanoate

stearate

octanoate

palmitate

decanoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

linoleate

oleate

γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

(2E,6E)-farnesoate

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

(2R,3S)-2-methylisocitrate

(R)-glycerate

(R)-3-hydroxybutanoate

(2S,3S)-2-methylcitrate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(3E)-2-oxohex-3-enedioate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

chorismate

D-galactarate

D-glucarate

fumarate

succinate

(S)-malate

toluene

2-nitrobenzoate

2-hydroxylaminobenzoate

cyanuric acid

4-tyrosol

4-hydroxybenzoate

urate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

2,3-dihydroxy-trans-cinnamate

coumarinate

3-hydroxy-trans-cinnamate

5-chlorosalicylate

4-chlorosalicylate

tyramine

2-phenylethylamine

serotonin

2-aminophenol

4-methylphenol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-10

demethylmenaquinol-8

menaquinol-8

ubiquinol-9

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-10

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

metanephrine

normetanephrine

atrazine

(indole-3-yl)acetonitrile

acrylonitrile

hydrogen cyanide

preQ₀

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

2-hydroxychromene-2-carboxylate

7,8-dihydrolumazine

5,6,7,8-tetrahydromonapterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydropterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydromonapterin triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

riboflavin

FMN

FAD

FMNH₂

FADH₂

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

cob(I)alamin

adenosylcobalamin

sirohydrochlorin

cobyrinate

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

precorrin-2

precorrin-1

thiamine

nicotinate

L-ascorbate

nicotinamide

pyridoxine 5'-phosphate

pyridoxine

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxal 5'-phosphate

pyridoxal

coenzyme A

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

phenylacetyl-CoA

2-methylbutanoyl-CoA

acetyl-CoA

3'-dephospho-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

malonyl-CoA

succinyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

isobutanoyl-CoA

2-methylacetoacetyl-CoA

(2E,5Z)-tetradecenoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

(E)-glutaconyl-CoA

dihomo γ-linolenoyl-CoA

benzoyl-CoA

chenodeoxycholoyl-CoA

choloyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

hexanoyl-CoA

butanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

ethene

phenylacetate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(+)-7-epi-jasmonate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

methane

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

(S)-(+)-allantoin

6-caprolactam

acetamide

3-chloro-cis,cis-muconate

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

glycerophosphoserine

glycerophosphoglycerol

choline

betaine aldehyde

betaine aldehyde hydrate

agmatine

spermidine

putrescine

spermine

N¹-acetylspermine

N-acetylputrescine

N¹-acetylspermidine

2-aminoprop-2-enoate

2-iminopropanoate

4-[(E)-2-(methylamino)ethenyl]phenol

4-[(Z)-2-aminoethenyl]phenol

(2Z)-2-aminobut-2-enoate

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

superoxide

phosphonate

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

ammonium

H⁺

Fe²⁺

Co²⁺

Zn²⁺

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

dimethyl sulfide

3-(methylsulfanyl)propanal

methionol

glutathione

(R)-S-lactoylglutathione

taurine

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

thiocyanate

methanethiol

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydroxyl radical

monodehydroascorbate radical

nitric oxide

4-[(2Z)-2-(methylimino)ethyl]phenol

4-(2-iminoethyl)phenol

2-iminobutanoate

2-iminosuccinate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

S⁰

oxygen

hydrogen sulfide

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

protoporphyrinogen IX

hemin

siroheme

protoheme

nitrous oxide

N₂

cobalt-sirohydrochlorin

cobalt-factor III

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

carboxyphosphinopyruvate

1-carboxyvinyl carboxyphosphonate

3-(hydroxyphosphinoyl)pyruvate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal