an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-C-methyl-D-erythritol 4-phosphate

α-D-ribose 1,5-bisphosphate

kynurenine

dimethylarsinous acid

citrate

3-hydroxy-5- oxohexanoyl-CoA

(S)-4-amino-5-oxopentanoate

γ-L-glutamyl 5-phosphate

S-methyl-5'-thioadenosine

gallate

thiamine phosphate

L-dehydro-ascorbate

xanthine

(R)-mevalonate

isochorismate

thiamine diphosphate

hydrogen peroxide

shikimate 3-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

2-iminoacetate

N-acetylglutamyl-phosphate

aminoacetone

nicotinate adenine dinucleotide

(S)-ureidoglycolate

CDP-N-methylethanolamine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

N¹-(5-phospho-β-D-ribosyl)glycinamide

1,4-dihydroxy-2-naphthoyl-CoA

(R)-mevalonate diphosphate

L-β-lysine

β-nicotinate D-ribonucleotide

coproporphyrinogen III

5-phospho-β-D-ribosylamine

quinolinate

tartronate semialdehyde

dihydrophloroglucinol

(R)-4'-phosphopantothenoyl-L-cysteine

methylarsonate

(S)-2,3,4,5-tetrahydrodipicolinate

orotidine 5'-phosphate

L-arginino-succinate

cacodylate

3-dehydroshikimate

H₂O

L-histidinol phosphate

prephenate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

carbamoyl phosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(R)-5-phosphomevalonate

phloroglucinol

α-D-glucosamine 1-phosphate

2-succinylbenzoate

1,4-dihydroxy-2-naphthoate

glutathione disulfide

oxamate

(R)-1-aminopropan-2-ol

6-phospho D-glucono-1,5-lactone

5-amino-6-(5-phospho-D-ribosylamino)uracil

histidinol

selenophosphate

(R)-2,3-dihydroxy-3-methylpentanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(D-ribitylamino)uracil

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

lipoamide

(S)-2,3-dihydrodipicolinate

(S)-2-aceto-2-hydroxybutanoate

(S)-5-hydroxyisourate

ethanolamine

hydrogen selenide

propanoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

N⁵-carboxyaminoimidazole ribonucleotide

(R)-4'-phosphopantothenate

oxaloacetate

N-tetradecanoylglycyl-peptide

glycerone phosphate

N-carbamoyl-2-oxoglycine

hexulose 6-phosphate

isopentenyl diphosphate

5-aminolevulinate

4-amino-4-deoxychorismate

ammonia

N-succinyl-2-amino-6-ketopimelate

dihydrolipoamide

prenyl diphosphate

3-methyl-2-oxobutanoate

glycyl-peptide

N-methylethanolamine phosphate

(3S,5S)-3,5-diaminohexanoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

butanoyl phosphate

phosphoenolpyruvate

D-erythro-imidazole-glycerol-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

anthranilate

L-canavanine

acetoacetate

5-enolpyruvoyl-shikimate 3-phosphate

arsenite

(S)-dihydroorotate

1,2,3,5-tetrahydroxybenzene

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

N-(5-phosphoribosyl)-anthranilate

histidinal

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(S)-5-amino-3-oxohexanoate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

preuroporphyrinogen

CO₂

urea

H₂

3-hydroxyanthranilate

3-dehydroquinate

urea-1-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

acetyl phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

D-gluconate 6-phosphate

5-oxo-L-proline

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

methylarsonite

4'-phosphopantetheine

(R)-pantothenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N-Formyl-L-kynurenine

hydroxypyruvate

CDP-N-dimethylethanolamine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

phosphocholine

pseudouridine 5'-phosphate

(S)-3-methyl-2-oxopentanoate

tRNA pseudouridine

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

pyrogallol

N-succinyl-L,L-2,6-diaminopimelate

3-hydroxy-5-oxohexanoate

porphobilinogen

O-phosphoethanolamine

shikimate

2-amino-3-carboxymuconate-6-semialdehyde

imidazole acetol-phosphate

N-dimethylethanolamine phosphate

ethene

D-gluconate

β-D-fructofuranose

glycerol

D-sorbitol 6-phosphate

D-mannitol 1-phosphate

β-L-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycolaldehyde

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-L-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

D-glyceraldehyde 3-phosphate

ADP-D-ribose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine

GDP-α-D-rhamnose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-galactose

GDP-α-D-mannose

GDP-β-L-gulose

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

(R)-S-lactoylglutathione

5,10-methenyltetrahydrofolate mono-L-glutamate

myo-inositol

phytate

D-myo-inositol (3,4,5,6)-tetrakisphosphate

D-myo-inositol (3,4)-bisphosphate

D-myo-inositol (3,4,6)-trisphosphate

1D-myoinositol 5-diphosphate 1,2,3,4,6-pentakisphosphate

D-myo-inositol 1,3,4,5,6-pentakisphosphate

1D-myo-inositol 3-monophosphate

ethanol

1-octanol

2,3-dihydroxybenzoate

enterobactin

methanol

3-phospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

(S)-3-hydroxy-isobutanoate

2-methoxy-6-(all-trans-octaprenyl)phenol

allantoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

(S)-(+)-allantoin

L-methionine

L-proline

L-leucine

L-alanine

glycine

L-isoleucine

L-tryptophan

L-cysteine

L-phenylalanine

L-valine

L-ornithine

L-glutamine

L-threonine

L,L-diaminopimelate

L-histidine

L-arginine

L-lysine

L-glutamate

L-cystathionine

L-serine

L-aspartyl-4-phosphate

L-tyrosine

L-aspartate

L-asparagine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-2-amino-3-oxobutanoate

3-hydroxy-L-kynurenine

N-acetyl-L-glutamate

L-citrulline

O-phospho-L-homoserine

L-canaline

L-aspartate 4-semialdehyde

L-homocysteine

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

1-aminocyclopropane-1-carboxylate

L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

(S)-3-amino-2-methylpropanoate

cis-aconitate

D-threo-isocitrate

acetate

orotate

(S)-1-pyrroline-5-carboxylate

octanoate

butanoate

2-oxoglutarate

2-oxobutanoate

glyoxylate

pyruvate

propanoate

formate

(S)-lactate

(R)-lactate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-aminobenzoate

chorismate

succinate

fumarate

(S)-malate

OH^-

hydrogencarbonate

phosphate

diphosphate

H⁺

Fe²⁺

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

protoheme

guanine

adenine

2'-deoxyadenosine

2'-deoxyinosine

xanthosine

guanosine

adenosine

inosine

hypoxanthine

XMP

IMP

GMP

AMP

ATP

GTP

ADP

GDP

dGTP

dATP

dADP

dGDP

dGMP

dUMP

CDP-ethanolamine

dTMP

dCDP

dUTP

dTTP

dTDP

uracil

dUDP

CTP

dCTP

UDP

CDP-choline

UTP

CDP

CMP

UMP

uridine

cytidine

2'-deoxyuridine

thymidine

2'-deoxycytidine

FMN

riboflavin

FAD

FADH₂

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

tetrahydrofolate-L-glutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

(S)-methylmalonate-semialdehyde

coenzyme A

nitric oxide

monodehydroascorbate radical

hydrogen cyanide

(S)-ureidoglycine

N-acetyl-D-mannosamine 6-phosphate

adenylo-succinate

cyclic-GMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

NADH

NADPH

NADP⁺

NAD⁺

tRNA uridine

β-nicotinamide D-ribonucleotide

glutaryl-CoA

acryloyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

succinyl-CoA

(S)-3-aminobutanoyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

methylacrylyl-CoA

acetyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(E)-glutaconyl-CoA

2-methylbutanoyl-CoA

malonyl-CoA

(S)-lactoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

acetoacetyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

myristoyl-CoA

crotonyl-CoA

(S)-malyl-CoA

L-galactono-1,4-lactone

sn-glycerol 3-phosphate

oxygen

L-ascorbate

thiamine

nicotinate

pyridoxal

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxal 5'-phosphate

urate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-methylphenol

3-demethylubiquinol-8

menaquinol-8

demethylmenaquinol-8

ubiquinol-8

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

ubiquinone-8

methylglyoxal

formaldehyde

1-octanal

acetaldehyde

methane

2-octaprenylphenol

2-iminosuccinate

3-(all-trans-octaprenyl)benzene-1,2-diol

choline

(+)-ureidoglycolate

3-octaprenyl-4-hydroxybenzoate

all-trans-octaprenyl diphosphate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine