ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C12274

enol-phenylpyruvate

C1010

ammonia

C13955

octadecanal

C13986

pseudouridine

C12214

(S)-4-amino-5-oxopentanoate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C6369

(S)-2-aceto-2-hydroxybutanoate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C2191

carbamoyl phosphate

C12056

L-arginino-succinate

C352

2-iminoacetate

C1325

4-amino-4-deoxychorismate

C13909

CDP-glycerol

C15056

salicyl alcohol

C2580

methylsalicylate

C13627

DNA without lesion

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C11930

N-acetylglutamyl-phosphate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C11874

N-succinyl-2-amino-6-ketopimelate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C11604

thiamine diphosphate

C11826

oxalosuccinate

C949

lipid X

C1108

acetyl phosphate

C3684

3-deoxy-α-D-manno-2-octulosonate

C3262

3-methyl-2-oxobutanoate

C3319

4-methyl-2-oxopentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C10349

glycerone phosphate

C11639

succinate semialdehyde

C571

4-hydroxy-2-nonenal

C12162

hydrogen peroxide

C12333

dihydrolipoamide

C11690

S-acetyldihydrolipoamide

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C12139

preuroporphyrinogen

C11767

porphobilinogen

C1445

adenosine 3',5'-bisphosphate

C11479

phosphoenolpyruvate

C6361

acetoacetate

C13738

cis-coumarinic acid-β-D-glucoside

C11662

scopolin

C1297

4-hydroxybenzaldehyde

C451

4-methylumbelliferyl glucoside

C10794

lipid A disaccharide (E. coli)

C6099

lipid IVA

C3821

5-methylcytosine

C1231

5-aminolevulinate

C6444

oxaloacetate

C891

citrate

C11748

pseudouridine 5'-phosphate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C11543

H2O

C873

coproporphyrinogen III

C928

CO2

C9077

(2E,6E)-farnesyl diphosphate

C12247

L-homocysteine

C6043

4-methylphenol

C4632

(glutathion-S-yl)-4-hydroxy-2-nonenal

C10799

DNA with lesion

C6624

protoheme

C13422

hydrogen cyanide

C7666

protoporphyrinogen IX

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C7662

uroporphyrinogen-I

C7672

coproporphyrinogen I

C7121

oxygen

C8419

sn-glycerol 3-phosphate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6293

3-(all-trans-octaprenyl)benzene-1,2-diol

C6287

2-octaprenylphenol

C6277

2-methoxy-6-(all-trans-octaprenyl)phenol

C8958

superoxide

C13114

1-chloro-2,4-dinitrobenzene

C4658

2,4-dinitrophenyl-S-glutathione

C4734

dimethyl sulfide

C4678

glutathione

C12587

L-cysteate

C12637

3-sulfopyruvate

C1689

trimethyl sulfonium

C7036

hydrogencarbonate

C7006

chloride

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C11023

Fe2+

C4320

H+

C4328

ammonium

C6526

(2Z)-2-aminobut-2-enoate

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C6178

heptadecane

C9098

methyl (indol-3-yl)acetate

C9096

(indol-3-yl)acetate

C5313

2-methylbutanoyl-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C4937

3'-dephospho-CoA

C5314

2-methylacetoacetyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C4913

malonyl-CoA

C4901

succinyl-CoA

C5298

acetyl-CoA

C5919

(S)-methylmalonyl-CoA

C1337

crotonyl-CoA

C5635

oleoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C7162

cerotoyl-CoA

C7169

2-carboxy-cerotoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C3727

all-trans-retinyl palmitate

C5392

(S)-NADHX

C5394

(R)-NADHX

C14497

NADPH

C14500

NADH

C4020

NAD+

C4018

NADP+

C5563

ubiquinol-10

C5535

ubiquinol-7

C5551

ubiquinol-9

C5543

ubiquinol-8

C1680

menaquinol-8

C1863

demethylmenaquinol-8

C1866

3-demethylubiquinol-10

C1865

3-demethylubiquinol-7

C1868

3-demethylubiquinol-9

C1867

3-demethylubiquinol-8

C10614

coenzyme A

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C10966

all-trans-retinol

C12730

7,8-dihydroneopterin 3'-triphosphate

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C7813

2'-deoxyadenosine

C7848

2'-deoxyguanosine

C7743

dAMP

C7840

dGMP

C7749

dITP

C7783

dATP

C7751

dGTP

C7747

dIDP

C7807

dGDP

C7823

dADP

C2559

adenosine tetraphosphate

C7817

IDP

C7795

GDP

C7757

ADP

C7741

IMP

C7811

XMP

C7827

GMP

C7809

AMP

C7759

ITP

C7745

GTP

C7844

ATP

C8764

dTTP

C8772

dCTP

C8724

dUTP

C8770

dUMP

C8761

CTP

C8752

dUDP

C8755

dCMP

C8733

dCDP

C8714

UDP

C8732

CDP

C8760

UTP

C8744

dTMP

C8720

dTDP

C8707

cytosine

C8739

uracil

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7780

UDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7822

UDP-N-acetyl-α-D-muramate

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7790

UDP-N-acetyl-α-D-mannosamine

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8547

UDP-N-acetyl-α-D-mannosaminuronate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C1939

dTDP-α-D-glucose

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C6945

5-fluorouracil

C10601

thymine

C2245

CMP

C2241

UMP

C9540

preQ1

C4655

coumarin

C4615

scopoletin

C10621

4-methylumbelliferone

C13354

preQ0

C13404

neolinustatin

C13376

lotaustralin

C13380

linustatin

C13392

linamarin

C13426

taxiphyllin

C4190

2-hydroxy-2-methylpropanenitrile

C13330

(2R)-2-hydroxy-2-methylbutanenitrile

C7060

3-hexaprenyl-4-hydroxybenzoate

C6934

4-hydroxybenzoate

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C2879

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

C11421

protocatechuate

C2569

coumarinate

C11429

salicylate

C8974

4-aminobenzoate

C3536

L-α-amino-ε-keto-pimelate

C5579

L-serine

C5588

L-leucine

C5609

L-glutamine

C12067

glycine

C5597

L-alanine

C8797

D-glutamate

C5607

L-glutamate

C5642

L-arginine

C5584

L-lysine

C5596

L-aspartate

C5577

L-threonine

C5573

L-tyrosine

C2469

L-phenylalanine

C8799

D-alanine

C12073

L-aspartyl-4-phosphate

C14973

N-acetyl-L-glutamate

C12303

L-citrulline

C5603

L-isoleucine

C5571

L-valine

C12245

L-homoserine

C12231

L-ornithine

C12239

L-aspartate 4-semialdehyde

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C5585

meso-diaminopimelate

C5583

L-methionine

C5580

L,L-diaminopimelate

C8950

chorismate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C8536

3-carboxy-cis,cis-muconate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C3308

pyruvate

C11517

acetate

C3421

formate

C3418

butanoate

C6371

3-oxoadipate

C3383

palmitate

C3345

3-phenyl-2-oxopropanoate

C3351

glyoxylate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C3448

methanol

C6241

1-oleoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C8322

di-trans,octa-cis-undecaprenyl phosphate

C15301

all-trans-nonaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C4545

3-nonaprenyl-4-hydroxybenzoate

C4549

3-heptaprenyl-4-hydroxybenzoate

C4550

3-decaprenyl-4-hydroxybenzoate

C4553

3-octaprenyl-4-hydroxybenzoate

C10226

α-Kdo-(2→6)-lipid IVA

C10223

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C6917

β-D-cellobiose

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C6719

β-D-mannopyranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C10604

D-ribulose 5-phosphate

C8813

α-D-mannose 1-phosphate

C10288

adenylo-succinate

C5552

5'-deoxyadenosine

C10267

pppGpp

C10266

ppGpp

C9773

5-fluorocytosine

C10285

adenosine pentaphosphate

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C6599

2-iminobutanoate

C8496

N-acetyl-L-glutaminyl-L-glutamine

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C1434

D-alanyl-D-alanine