an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
3-oxo-5,6-didehydrosuberyl-CoA semialdehyde
3-oxo-5,6-didehydrosuberyl-CoA
2-oxepin-2(3H)-ylideneacetyl-CoA
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
(S)-3-methyl-2-oxopentanoate
1,6-anhydro-N-acetyl-β-muramate
2-phenylethanol
2-methylbutanol
2-methylbutanal
3-methylbutanol
3-methylbutanal
isobutanol
indole-3-glycol
indole-3-glycol aldehyde
3-methoxy-4-hydroxyphenylglycolaldehyde
5-hydroxytryptophol
5-hydroxyindole acetaldehyde
P1,P4-bis(5'-guanosyl) tetraphosphate
2-keto-D-gluconate
2,5-didehydro-D-gluconate
L-arginino-succinate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
autoinducer 2
hydrogen selenide
L-selenocystathionine
carbon monoxide
S-ribosyl-L-homocysteine
salicyl alcohol
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
prenyl diphosphate
4'-phosphopantetheine
(R)-4'-phosphopantothenoyl-L-cysteine
orotidine 5'-phosphate
(S)-dihydroorotate
2-dehydropantoate
(lipoyl)adenylate
dihydrolipoamide
S-acetyldihydrolipoamide
2-(α-hydroxyethyl)thiamine diphosphate
thiamine diphosphate
acetoacetate
L-histidinol phosphate
histidinol
(R)-pantothenate
(R)-4'-phosphopantothenate
carbamoyl phosphate
coproporphyrinogen III
phosphonoacetate
α-D-glucosamine 1-phosphate
6-phospho D-glucono-1,5-lactone
4-aminobutanoate
enol-phenylpyruvate
shikimate 3-phosphate
prephenate
5-enolpyruvoyl-shikimate 3-phosphate
3-dehydroquinate
shikimate
3-dehydroshikimate
3-keto-β-D-galactose
D-gluconate 6-phosphate
xanthine
N-succinyl-L,L-2,6-diaminopimelate
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
phosphoenolpyruvate
3-deoxy-D-arabino-heptulosonate 7-phosphate
cis-coumarinic acid-β-D-glucoside
scopolin
4-hydroxybenzaldehyde
4-methylumbelliferyl glucoside
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
5-dehydro-D-gluconate
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
hydrogen peroxide
glutathione disulfide
oxaloacetate
O-acetyl-L-serine
thiamine phosphate
isopentenyl diphosphate
3-keto-L-gulonate 6-phosphate
CO2
acetyl phosphate
N-acetyl-D-muramate 6-phosphate
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
dihydroxyacetone
2-amino-2-deoxy-D-gluconate 6-phosphate
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
2-phosphoglycolate
glycolate
H2O
glycerone phosphate
vanillin
DNA without lesion
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
5-hydroxyindole thiazolidine carboxylate
ammonia
5-methylcytosine
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
ethanolamine
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
(R)-mevalonate
4-amino-2-methyl-5-pyrimidinemethanol
3-phosphooxypyruvate
2-iminoacetate
glycoprotein N-acetyl-D-glucosaminyl-phospho-D-mannose
glycoprotein-phospho-D-mannose
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
histidinal
mercuriphenyl acetate
2,3-didehydroadipyl-CoA
3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA
(E)-4-coumaroyl-CoA
3,5-dihydro-4H-imidazol-4-one
4-aminoimidazole
5-aminoimidazole-4-carboxylate
5-ureidoimidazole-4-carboxylate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
quinolinate
2-keto-L-gulonate
3-methyl-2-oxobutanoate
(2E,6E)-farnesyl diphosphate
superoxide
hydroxyl radical
DNA with lesion
phenylacetate
protoheme
hydrogen cyanide
4-nitrophenyl phosphate
4-nitrophenol
N-acetyl-β-neuraminate
methionol
3-(methylsulfanyl)propanal
dimethyl sulfide
glutathione
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
trimethyl sulfonium
sulfate
thiosulfate
hydrogencarbonate
chloride
phosphate
diphosphate
ammonium
H+
Fe2+
Co2+
Cu2+
Zn2+
Hg2+
Ca2+
Mg2+
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
2-iminopropanoate
2-aminoprop-2-enoate
putrescine
spermidine
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
glycerophosphoglycerol
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
(S)-2-chloropropanoate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
nicotinamide
phenylacetyl-CoA
2-methylbutanoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
3'-dephospho-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
(E)-glutaconyl-CoA
acetyl-CoA
CoA-disulfide
isobutanoyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
3-hydroxyisovaleryl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
(E)-2-methylcrotonoyl-CoA
(3S)-hydroxyadipyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA
methylacrylyl-CoA
malonyl-CoA
crotonyl-CoA
(2E)-oct-2-enoyl-CoA
(2E)-dec-2-enoyl-CoA
oleoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(S)-3-hydroxyoctanoyl-CoA
(S)-3-hydroxydecanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
butanoyl-CoA
propanoyl-CoA
hexadecanedioyl-CoA
3-oxoadipyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
(S)-3-hydroxy-isobutanoyl-CoA
FMN
FADH2
FAD
(S)-NADHX
(R)-NADHX
NADPH
NADH
NADP+
NAD+
(R)-lipoate
coenzyme A
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
nicotinate
thiamine
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
adenine
guanine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
xanthosine
guanosine
inosine
adenosine
hypoxanthine
purine
dGMP
dAMP
dITP
dGTP
dATP
dIDP
dGDP
dADP
IDP
GDP
ADP
GMP
IMP
XMP
AMP
ITP
GTP
ATP
uridine 2'3'-cyclic monophosphate
cytidine 2',3'-cyclic monophosphate
cytidine-3'-monophosphate
uridine 3'-monophosphate
orotate
uracil
dTDP
dTMP
dCMP
dTTP
dUDP
dCDP
UDP
CDP
dUMP
dUTP
UTP
dCTP
CTP
cytosine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
dTDP-α-D-glucose
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
5-fluorouracil
uridine
cytidine
2'-deoxycytidine
2'-deoxyuridine
thymidine
thymine
UMP
CMP
preQ1
scopoletin
coumarin
4-methylumbelliferone
preQ0
neolinustatin
lotaustralin
linustatin
linamarin
taxiphyllin
2-hydroxy-2-methylpropanenitrile
(2R)-2-hydroxy-2-methylbutanenitrile
4-tyrosol
benzene
8-hydroxypurine
6,8-dihydroxypurine
urate
3-methoxy-4-hydroxyphenylglycol
phenylacetaldehyde
(4-hydroxyphenyl)acetaldehyde
hydroquinone
4-methylphenol
3,4-dihydroxyphenylglycol
3,4-dihydroxyphenylglycolaldehyde
coumarinate
4-aminobenzoate
glycine
L-threonine
L-cysteine
L-asparagine
L-glutamine
L-tyrosine
L-serine
L-lysine
L-arginine
L-histidine
L-glutamate
L-aspartate
L-phenylalanine
D-glutamate
D-alanine
D-aspartate
seleno-L-homocysteine
L-aspartyl-4-phosphate
N-formimino-glycine
N-acetyl-L-ornithine
N-acetyl-L-methionine
N-acetyl-L-glutamate
N-carbamoyl-L-aspartate
3-phospho-L-serine
L-citrulline
S-sulfo-L-cysteine
L-homocysteine
L-aspartate 4-semialdehyde
L-homoserine
O-phospho-L-homoserine
L-ornithine
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
meso-diaminopimelate
L-selenocysteine
L-valine
L-isoleucine
L-alanine
L-leucine
L-methionine
L-cystathionine
L,L-diaminopimelate
β-alanine
(S)-3-amino-2-methylpropanoate
chorismate
fumarate
succinate
(S)-malate
(S)-lactate
(R)-lactate
(R)-glycerate
pyruvate
acetate
formate
butanoate
(R)-pantoate
D-gluconate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
2-oxobutanoate
2-oxoglutarate
glyoxylate
methylglyoxal
diacetyl
(R)-acetoin
isobutanal
1-propanal
butan-1-al
acetaldehyde
phytenal
D-glyceraldehyde
α-D-glucopyranose
β-D-glucopyranose
β-D-ribopyranose
β-D-galactopyranose
α-D-galactopyranose
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
propan-1-ol
ethanol
butan-1-ol
methanol
phytol
glycerol
myo-inositol
1D-myo-inositol 2-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 4-monophosphate
1D-myo-inositol 3-monophosphate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
dioleoyl phosphatidate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
vanillylamine
iron(III) dicitrate
ferric-enterobactin complex
XLLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XXLG xyloglucan oligosaccharide
XXXG xyloglucan oligosaccharide
maltotriose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
sucrose
α-lactose
β-D-cellobiose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
β-D-fructofuranose
D-ribulose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
3'-ketolactose
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
sucrose 6F-phosphate
N-monoacetylchitobiose 6'-phosphate
N,N'-diacetylchitobiose 6'-phosphate
β-D-cellobiose 6'-phosphate
α-lactose 6'-phosphate
ADP-α-D-glucose
GDP-α-D-mannose
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
β-D-fructose 1,6-bisphosphate
D-tagatofuranose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
β-D-fructofuranose 6-phosphate
L-ascorbate 6-phosphate
D-tagatofuranose 6-phosphate
D-fructose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
L-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
methyl β-D-glucoside 6-phosphate
L-idonate
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
adenosine 3'-monophosphate
guanosine 3'-monophosphate
8-oxo-GTP
8-oxo-GMP
pppGpp
ppGpp
5'-deoxyadenosine
8-oxo-dGTP
8-oxo-dGMP
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
β-nicotinamide D-ribonucleotide
5-fluorocytosine
2-iminosuccinate
protoporphyrinogen IX
protoporphyrin IX
uroporphyrinogen-III
hydrogen sulfide
oxygen
Hg0
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
2-phospho-D-glycerate
3-phospho-D-glycerate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
(R)-methylmalonate-semialdehyde
(S)-methylmalonate-semialdehyde
5,10-methenyltetrahydrofolate mono-L-glutamate
(S)-3-hydroxy-isobutanoate