an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

picolinate

5-hydroxyindole thiazolidine carboxylate

ammonia

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

1-piperideine 6-carboxylate

L-dehydro-ascorbate

8-amino-7-oxononanoate

(S)-2-amino-6-oxohexanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

2,5-dioxopentanoate

2-dehydro-3-deoxy-D-arabinonate

D-xylonate

2-iminoacetate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

2-isopropylmaleate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

carbon monoxide

deoxycholoyl-CoA

12α-hydroxy-3-oxocholan-24-oyl-CoA

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxocholoyl-CoA

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

H₂

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-oleoylglycerol

2-oxopent-4-enoate

digallate

gallate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(L-threonylcarbamoyl)adenylate

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7-α,12-α-dihydroxy-3-oxochol-4-enoate

12-α-hydroxy-3 oxochola-4,6-dienoate

DNA without lesion

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-demethylubiquinol-6

2-dehydropantoate

heteropyrithiamine

(R)-2,3-dihydroxy-3-methylpentanoate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

γ-L-glutamyl 5-phosphate

autoinducer 2

hydrogen selenide

O-acetyl-L-serine

β-D-ribosylnicotinate

N-(5-phosphoribosyl)-anthranilate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

citrate

oxalosuccinate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

citraconate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-(α-hydroxyethyl)thiamine diphosphate

dihydrolipoamide

S-acetyldihydrolipoamide

(lipoyl)adenylate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

succinate semialdehyde

methylsalicylate

poly (glycerol phosphate)

CDP-glycerol

orotidine 5'-phosphate

(S)-dihydroorotate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

phosphonoacetate

acetyl phosphate

acetoacetate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

(E)-3-(methoxycarbonyl)pent-2-enedioate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

(R)-pantothenate

(R)-4'-phosphopantothenate

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-pyrimidinemethanol

prenyl diphosphate

(R)-mevalonate diphosphate

isopentenyl diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

4-hydroxy-2-nonenal

carbamoyl phosphate

3-dehydroquinate

3-dehydroshikimate

xanthine

prephenate

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

coproporphyrinogen III

D-erythro-imidazole-glycerol-phosphate

histidinal

histidinol

imidazole acetol-phosphate

L-histidinol phosphate

glutathione disulfide

1,6-anhydro-N-acetyl-β-muramate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

salicyl alcohol

S-ribosyl-L-homocysteine

α-D-glucosamine 1-phosphate

D-xylono-1,5-lactone

2-keto-D-gluconate

2,5-didehydro-D-gluconate

arsenite

4-phosphooxy-L-threonine

4-amino-4-deoxychorismate

3-phosphooxypyruvate

N-succinyl-L,L-2,6-diaminopimelate

anthranilate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

nicotinate adenine dinucleotide

ethanolamine

adenosine 3',5'-bisphosphate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

7,8-diaminopelargonate

dethiobiotin

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

β-nicotinate D-ribonucleotide

hydrogen peroxide

quinolinate

hexulose 6-phosphate

thiamine diphosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

oxaloacetate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

L-canavanine

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetyl-L,L-2,6-diaminopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

5-methylcytosine

3-keto-L-gulonate 6-phosphate

CO₂

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

dihydroxyacetone

glycerone phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

2-phosphoglycolate

glycolate

H₂O

(2E,6E)-farnesyl diphosphate

L-α-amino-ε-keto-pimelate

L-citrulline

L-methionine

L-tyrosine

L-valine

L-leucine

L-isoleucine

L-histidine

L-phenylalanine

L-proline

L-lysine

L-asparagine

L-cysteine

L-threonine

glycine

L-glutamine

L-alanine

L-glutamate

L-arginine

L-aspartate

L-serine

L-tryptophan

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-ornithine

O-succinyl-L-homoserine

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

N^ω-hydroxy-L-arginine

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-methionine

D-aspartate

D-alanine

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

S-methyl-L-methionine

N-acetyl-L-methionine

N-acetyl-L-glutamate

L-proline betaine

O-acetyl-L-homoserine

4-methylphenol

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

superoxide

monodehydroascorbate radical

hydroxyl radical

nitric oxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

4-nitrophenyl phosphate

4-nitrophenol

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

selenide

thiosulfate

hydrogensulfite

hydrogencarbonate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Ca²⁺

Zn²⁺

Fe²⁺

Cu²⁺

Cd²⁺

Co²⁺

Mn²⁺

H⁺

ammonium

glycine betaine

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

putrescine

spermidine

N-acetyl-serotonin

serotonin

ferrichrome

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

1-oleoyl-2-palmitoyl-phosphatidylglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

cephalosporin C

deacetylcephalosporin C

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

17β-estradiol

estrone

3-dehydrocholate

isocholate

deoxycholate

glycocholate

cholate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

isobutanoyl-CoA

phenylacetyl-CoA

2-methylbutanoyl-CoA

2-methylacetoacetyl-CoA

choloyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

acetyl-CoA

succinyl-CoA

crotonyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

propanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

D-glucono-1,5-lactone

FADH₂

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

2-iminobutanoate

2-iminosuccinate

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

riboflavin

nicotinate

thiamine

L-ascorbate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

pyridine

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

ITP

GTP

ATP

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

formylaminopyrimidine

orotate

aminomethylpyrimidine

dUDP

dTTP

dCDP

dTMP

dTDP

UDP

CDP

cytidine-3'-monophosphate

uridine 3'-monophosphate

dCMP

dUMP

cytosine

uracil

dUTP

UTP

dCTP

CTP

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

UMP

CMP

preQ₁

coumarin

scopoletin

4-methylumbelliferone

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

2,3-dihydroxybenzoate

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

coumarinate

trans-cinnamate

salicylate

4-aminobenzoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

trans-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

pyruvate

acetate

formate

3-oxoadipate

palmitate

D-gluconate

(R)-pantoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

methylglyoxal

diacetyl

(R)-acetoin

glycolaldehyde

butan-1-al

formaldehyde

isobutanal

1-propanal

acetaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

butan-1-ol

propan-1-ol

methanol

ethanol

phytol

glycerol

L-arabinitol

galactitol

D-mannitol

D-mannitol 1-phosphate

(3R)-linalool

(3S)-linalool

myo-inositol

scyllo-inosose

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

iron(III) dicitrate

ferric-enterobactin complex

1-(β-D ribofuranosyl)nicotinamide

raffinose

maltotriose

stachyose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

melibiose

sucrose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

sucrose 6^G-phosphate

β-D-cellobiose 6'-phosphate

α-lactose 6'-phosphate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-allulose 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

aldehydo-D-allose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

L-ascorbate 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-GMP

8-oxo-dGTP

8-oxo-dGMP

cyclic-AMP

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenylo-succinate

5'-deoxyadenosine

5-fluorocytosine

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate