an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

xanthine

H₂O

vanillin

urea

trimethylamine

trimethylamine N-oxide

thiamine diphosphate

thiamine phosphate

tartronate semialdehyde

L-tartrate

succinate semialdehyde

shikimate 3-phosphate

shikimate

(L-seryl)adenylate

selenophosphate

S-adenosyl 3-(methylsulfanyl)propylamine

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

S-acetyldihydrolipoamide

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-1-amino-2-propanol O-2-phosphate

quinolinate

L-quinate

propanoyl phosphate

propionamide

prephenate

porphobilinogen

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

phosphoenolpyruvate

3'-phosphoadenylyl-sulfate

(R)-pantothenate

4'-phosphopantetheine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-oxopent-4-enoate

glutathione disulfide

oxalosuccinate

oxaloacetate

orotidine 5'-phosphate

hydroxypyruvate

O-ureido-L-homoserine

2-succinylbenzoate

β-nicotinate D-ribonucleotide

N²-succinyl-L-ornithine

N²-succinylglutamate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N-Formyl-L-kynurenine

N-ethylmaleimide

N-acetylglutamyl-phosphate

N-acetyl-D-galactosamine 6-phosphate

N-(5-phosphoribosyl)-anthranilate

N-(2,3-dihydroxybenzoyl)-L-serine

2-methylbutanal

3-oxopropanoate

lipid IV_A

L-histidinol phosphate

γ-L-glutamyl 5-phosphate

L-dehydro-ascorbate

L-arginino-succinate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

itaconate

isochorismate

isobutanol

indole-3-glycol

imidazole acetol-phosphate

preuroporphyrinogen

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

hydrogen peroxide

H₂

4-amino-2-methyl-5-pyrimidinemethanol

histidinol

histidinal

carbonic acid

glycolate

glutathionylspermidine

(S)-4-amino-5-oxopentanoate

α-D-glucosamine 1-phosphate

γ-butyrobetaine

formamide

ethanolamine

estrone 3-sulfate

enol-phenylpyruvate

5,6-dimethylbenzimidazole

autoinducer 2

1,4-dihydroxy-2-naphthoate

dihydroxyacetone

1-deoxy-L-glycero-tetrulose 4-phosphate

glycerone phosphate

dihydrolipoamide

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

7,8-diaminopelargonate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(S)-dihydroorotate

dethiobiotin

isopentenyl diphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

3-dehydroquinate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

nicotinate adenine dinucleotide

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

D-galactosamine-6-phosphate

D-erythro-imidazole-glycerol-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

6-phospho D-glucono-1,5-lactone

crotono-betaine

core oligosaccharide-lipid A (E. coli K-12 core type)

(L-aspartyl)adenylate

N-ethylsuccinimide

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

N-(2,3-dihydroxybenzoyl)-L-serine trimer

2-oleoylglycerol

N⁵-carboxyaminoimidazole ribonucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,4-dihydroxy-2-naphthoyl-CoA

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-isopropylmaleate

4-(γ-L-glutamylamino)butanoate

DNA without lesion

5-guanidino-2-oxopentanoate

N²-succinyl-L-glutamate 5-semialdehyde

(4S)-4-hydroxy-2-oxoheptanedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

arsenite

muconolactone

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-methylmalate

2-phenylethanol

2-methylbutanol

3-methylbutanol

3-methylbutanal

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

(2E)-2-hydroxypenta-2,4-dienoate

2-phosphoglycolate

(2,3-dihydroxybenzoyl)adenylate

5-amino-6-(5-phospho-D-ribosylamino)uracil

(R)-3-(phenyl)lactoyl-CoA

4-guanidinobutanoate

S-ribosyl-L-homocysteine

pimeloyl-CoA

N-acetyl-L-glutamate 5-semialdehyde

prenyl diphosphate

4-pyridoxolactone

2-oxovalerate

4-acetamidobutanoate

indole-3-ethanol

2-dehydro-6-phospho-D-gluconate

2,3-dioxo-L-gulonate

4-acetamidobutanal

D-gluconate 6-phosphate

hexulose 6-phosphate

(indol-3-yl)acetamide

3-keto-L-gulonate 6-phosphate

2-aminoacetaldehyde

salicyl alcohol

(-)-dehydrodiconiferyl acid aldehyde

(-)-dehydrodiconiferyl acid

(-)-dehydrodiconiferyl aldehyde

(-)-dehydrodiconiferyl alcohol

dialurate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

N-(2,3-dihydroxybenzoyl)-L-serine dimer

(+)-muconolactone

(3E)-2-oxopent-3-enoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

cyclic-2,3-O-oxalyl-L-threonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

cyclic- 3,4-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

L-selenocystathionine

adenosine 5'-phosphoselenate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

2-iminoacetate

3-methoxy-4-hydroxyphenylglycolaldehyde

bisorganyltrisulfane

5-hydroxytryptophol

5-hydroxyindole thiazolidine carboxylate

3-ethylmalate

5-amino-6-(5-phospho-D-ribitylamino)uracil

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

coproporphyrinogen III

citrate

cis,cis-muconate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

carbon monoxide

CO₂

carbamoyl phosphate

canavaninosuccinate

L-canavanine

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

lipid X

lipid A disaccharide (E. coli)

3-β-hydroxyandrost-5-en-17-one 3-sulfate

adenosine 5'-phosphosulfate

anthranilate

ammonia

5-amino-6-(D-ribitylamino)uracil

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

aminoacetone

α-ribazole 5'-phosphate

α-ribazole

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

acrylate

acrylamide

O-acetyl-L-serine

acetyl phosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

hydroxyacetone

8-amino-7-oxononanoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-oxo-L-proline

S-methyl-5'-thioadenosine

5-dehydro-4-deoxy-D-glucarate

5-hydroxyindole acetaldehyde

5-aminolevulinate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

4-phosphooxy-L-threonine

(R)-4'-phosphopantothenate

(4-hydroxyphenyl)acetate

4-guanidinobutyramide

4-aminobutanoate

4-amino-4-deoxychorismate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phenylpropanoate

3-phosphooxypyruvate

acetoacetate

indole-3-glycol aldehyde

3-(3-hydroxyphenyl)propanoate

5-enolpyruvoyl-shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroshikimate

(2S)-2-isopropylmalate

4-methyl-2-oxopentanoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

citraconate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydropantoate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-galactonate

(2R,3S)-3-isopropylmalate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-(α-hydroxyethyl)thiamine diphosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

3-(2,3-dihydroxyphenyl)propanoate

(R)-2,3-dihydroxy-3-methylpentanoate

3-amino-1-hydroxyacetone 1-phosphate

riboflavin

thiamine

nicotinamide

nicotinate

L-ascorbate

pyridoxine

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxal

D-carnitine

L-carnitine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

estrone

3-β-hydroxyandrost-5-en-17-one

salicylaldehyde

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

heptosyl-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

ferric-enterobactin complex

enterobactin

N¹-citryl-N⁶-acetyl-N⁶-hydroxy-L-lysine

aerobactin

vanillylamine

apo-4'-lycopenal

apo-4'-lycopenoate

geranyl diphosphate

(3R)-linalool

(3S)-linalool

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

superoxide

monodehydroascorbate radical

hydroxyl radical

a properly matched DNA base pair

a mismatched DNA base pair

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

cob(I)yrinate a,c-diamide

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cob(I)inamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobinamide

adenosylcobalamin 5'-phosphate

adenosylcobalamin

cob(I)alamin

protoheme

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetate

fluoroacetaldehyde

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

thymine

uracil

cytosine

hypoxanthine

guanine

adenine

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

preQ₁

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

UTP

UDP

dTTP

dTMP

dTDP

orotate

dUTP

dUMP

dUDP

dCTP

dCMP

dCDP

CTP

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

CDP

cytidine-3'-monophosphate

uridine 3'-monophosphate

UMP

CMP

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

ITP

GTP

ATP

XMP

IMP

GMP

AMP

IDP

GDP

ADP

dGDP

dADP

dIDP

dGMP

dAMP

dITP

dGTP

dATP

inosine

xanthosine

adenosine

guanosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

cyclic pyranopterin phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin triphosphate

7,8-dihydroneopterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

5,6,7,8-tetrahydromonapterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydropteroate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

FMNH₂

FADH₂

FMN

FAD

S-(hydroxymethyl)glutathione

methionol

3-(methylsulfanyl)propanal

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

hydrogen cyanide

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

preQ₀

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

siroheme

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-2-palmitoyl-phosphatidylglycerol

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

Fe³⁺

H⁺

Cu⁺

K⁺

ammonium

Cu²⁺

Ni²⁺

Fe²⁺

Zn²⁺

Mg²⁺

sulfate

sulfite

selenate

selenide

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

phosphonate

phosphate

diphosphate

triphosphate

chloride

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

ethene

(+)-7-epi-jasmonate

(indol-3-yl)acetate

N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

succinyl-CoA

methylacrylyl-CoA

malonyl-CoA

L-carnitinyl-CoA

isobutanoyl-CoA

γ-butyrobetainyl-CoA

3'-dephospho-CoA

D-carnitinyl-CoA

crotonobetainyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

dihomo γ-linolenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

itaconyl-CoA

acetyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

(E)-cinnamoyl-CoA

oleoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

hexadecanedioyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

3-oxooctadecanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

D-glucono-1,5-lactone

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

coenzyme A

N-acetyl-D-mannosamine 6-phosphate

(R)-3-(phenyl)lactate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

N-acetyl-β-neuraminate

urate

4-tyrosol

4-hydroxybenzoate

hydroquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

3-demethylubiquinol-8

demethylmenaquinol-8

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

2,3-dihydroxy-trans-cinnamate

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycolaldehyde

2,3-dihydroxybenzoate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

phenol

trans-cinnamate

salicylate

4-aminobenzoate

benzoate

acetamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

pppGpp

8-oxo-dGTP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

8-oxo-GMP

8-oxo-GTP

8-oxo-dGMP

5'-deoxyadenosine

cyclic-AMP

adenylo-succinate

NADH

NADPH

NAD⁺

NADP⁺

β-nicotinamide D-ribonucleotide

2-hydroxy-dATP

5-hydroxy-CTP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

glycerol

D-arabinitol

L-arabinitol

galactitol

D-mannitol

galactitol 1-phosphate

D-mannitol 1-phosphate

D-sorbitol 6-phosphate

D-xylulose

D-ribulose

L-ribulose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

β-L-rhamnopyranose

α-L-rhamnopyranose

aldehydo-D-mannose

β-D-mannopyranose

L-fuculose

keto-L-rhamnulose

α-L-fucopyranose

β-L-fucopyranose

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-mannosamine

D-glyceraldehyde

L-glyceraldehyde

glycolaldehyde

maltotriose

raffinose

maltotetraose

stachyose

maltopentaose

maltohexaose

maltoheptaose

sucrose

melibiose

α,α-trehalose

aldehydo-D-galacturonate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-deoxy-D-xylulose

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

α-D-ribose-1-phosphate

D-ribulose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-glucopyranose 1-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

keto-L-sorbose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

salicin 6-phosphate

arbutin-6-phosphate

D-tagatofuranose 6-phosphate

L-ascorbate 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

methyl β-D-glucoside 6-phosphate

sucrose 6^F-phosphate

sucrose 6^G-phosphate

α,α-trehalose 6-phosphate

β-D-cellobiose 6'-phosphate

D-glyceraldehyde 3-phosphate

D-gluconate

D-altronate

L-gulonate

D-galactonate

D-mannonate

L-α-amino-ε-keto-pimelate

D-serine

L-serine

glycine

L-tyrosine

L-threonine

L-glutamine

L-cysteine

L-asparagine

L-lysine

L-histidine

L-arginine

L-aspartate

L-glutamate

L-valine

L-tryptophan

L-proline

L-phenylalanine

L-methionine

L-leucine

L-alanine

L-isoleucine

β-alanine

(S)-3-amino-2-methylpropanoate

L-selenomethionine

seleno-L-homocysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-acetyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N⁶-acetyl-N⁶-hydroxy-L-lysine

N-carbamoyl-L-aspartate

N⁶-hydroxy-L-lysine

O-acetyl-L-homoserine

L,L-diaminopimelate

L-cystathionine

L-ornithine

D-glutamate

D-alanine

D-arginine

L-citrulline

S-adenosyl-L-methionine

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

L-homoserine

1-aminocyclopropane-1-carboxylate

S-adenosyl-L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

glycine betaine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

cadaverine

(E)-2-pentenal

diacetyl

caldariellaquinone

methylglyoxal

1-propanal

acetaldehyde

isobutanal

butan-1-al

formaldehyde

1-octanal

(S)-lactaldehyde

phytenal

(E)-2-hexenal

(E)-2-hexenol

methanol

butan-1-ol

propan-1-ol

ethanol

(E)-2-pentenol

phytol

ethylene glycol

(S)-propane-1,2-diol

myo-inositol

phytate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

1D-myo-inositol 3-monophosphate

chorismate

succinate

fumarate

(S)-malate

D-glucarate

cis-aconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

D-threo-isocitrate

propanoate

formate

acetate

pyruvate

(R)-lactate

(S)-lactate

butanoate

(R)-pantoate

D-tagaturonate

aldehydo-D-glucuronate

octanoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

stearate

palmitate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

glyoxylate

2-oxobutanoate

(S)-NADHX

(R)-NADHX

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol