an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

acetyl phosphate

pseudouridine 5'-phosphate

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

DNA without lesion

3-deoxy-D-arabino-heptulosonate 7-phosphate

phosphoenolpyruvate

pyrazine-2-carboxylate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

isopentenyl diphosphate

2,3-didehydroadipyl-CoA

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

CO₂

4-amino-4-deoxychorismate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

arsenite

S-ribosyl-L-homocysteine

5-deoxy-α-ribose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

2-oleoylglycerol

salicyl alcohol

carbonic acid

glycerone phosphate

prenyl diphosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

α-D-glucosamine 1-phosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

4-methyl-2-oxopentanoate

coproporphyrinogen III

(R)-4'-phosphopantothenate

(R)-pantothenate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

(2R,3S)-3-methylmalate

citraconate

2-isopropylmaleate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

citrate

ethanolamine

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

(R)-mevalonate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

carbamoyl phosphate

glutathione disulfide

(indol-3-yl)pyruvate

prephenate

shikimate 3-phosphate

shikimate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

3-dehydroshikimate

oxaloacetate

dihydroxyacetone

L-histidinol phosphate

imidazole acetol-phosphate

histidinol

histidinal

D-erythro-imidazole-glycerol-phosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

oxalosuccinate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(S)-dihydroorotate

orotidine 5'-phosphate

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

β-D-ribosylnicotinate

O-ureido-L-homoserine

N-(5-phosphoribosyl)-anthranilate

anthranilate

O-acetyl-L-serine

autoinducer 2

γ-L-glutamyl 5-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

L-canavanine

canavaninosuccinate

L-arginino-succinate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

3-keto-L-gulonate 6-phosphate

N-carbamoylputrescine

(lipoyl)adenylate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

propanoyl phosphate

urea

indole-3-lactate

hydrogen peroxide

acetoacetate

N⁵-carboxyaminoimidazole ribonucleotide

carbon monoxide

4-amino-2-methyl-5-pyrimidinemethanol

H₂

hydroxypyruvate

(4-hydroxyphenyl)acetate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

N-succinyl-L,L-2,6-diaminopimelate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

quinolinate

2-amino-3-carboxymuconate-6-semialdehyde

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

gallate

4-aminobutanoate

1,2,3,5-tetrahydroxybenzene

pyrogallol

phloroglucinol

dihydrophloroglucinol

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

ammonia

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

pseudouridine

H₂O

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

succinate semialdehyde

xanthine

(2E,6E)-farnesyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

UDP-α-D-galactose

lotaustralin

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

linamarin

neolinustatin

linustatin

taxiphyllin

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

L-ascorbate 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

sucrose 6^F-phosphate

sucrose 6^G-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α-lactose 6'-phosphate

β-D-cellobiose 6'-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-D-fructofuranose

glycolaldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

glycerol

D-mannitol 1-phosphate

D-sorbitol 6-phosphate

β-D-cellobiose

maltotriose

sucrose

melibiose

α-maltose

maltohexaose

maltopentaose

maltotetraose

maltoheptaose

stachyose

raffinose

4-methylumbelliferone

scopoletin

coumarin

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

(3R)-hydroxy-nonanoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1,2-dibutyrin

tributyrin

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

hydroquinone

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

protocatechuate

phytol

propan-1-ol

ethanol

butan-1-ol

methanol

methylglyoxal

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

phytenal

(S)-lactaldehyde

isobutanal

1-propanal

acetaldehyde

formaldehyde

butan-1-al

(R)-acetoin

diacetyl

L-α-amino-ε-keto-pimelate

L-aspartyl-4-phosphate

L-selenomethionine

seleno-L-homocysteine

O-acetyl-L-homoserine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

S-methyl-L-methionine

3-phospho-L-serine

L-tyrosine

L-serine

L-asparagine

L-glutamine

L-threonine

glycine

L-cysteine

L-glutamate

L-aspartate

L-lysine

L-histidine

L-arginine

D-alanine

D-glutamate

D-aspartate

L-phenylalanine

L-tryptophan

L-proline

L-leucine

L-alanine

(S)-3-amino-2-methylpropanoate

L-valine

L-isoleucine

L-methionine

L-cystathionine

L-ornithine

L,L-diaminopimelate

L-citrulline

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-homoserine

L-aspartate 4-semialdehyde

L-canaline

L-homocysteine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

meso-diaminopimelate

pyruvate

2-oxoglutarate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-aminobenzoate

benzoate

acetate

orotate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

butanoate

palmitate

stearate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

(R)-glycerate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

(S)-malate

4-tyrosol

urate

coumarinate

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

hydrogen cyanide

preQ₀

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

adenine

guanine

GTP

ITP

ATP

GMP

AMP

XMP

IMP

GDP

IDP

ADP

dGDP

dADP

dGTP

dATP

hypoxanthine

adenosine

xanthosine

guanosine

inosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

riboflavin

FMN

FAD

reduced riboflavin

FMNH₂

FADH₂

uracil

thymine

preQ₁

dUMP

dCMP

dTDP

dTMP

UTP

UDP

CDP

CTP

dTTP

dUTP

dCTP

dUDP

dCDP

UMP

CMP

2'-deoxyuridine

thymidine

2'-deoxycytidine

uridine

cytidine

nicotinate

nicotinamide

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

(R)-lipoate

coenzyme A

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

NAD⁺

NADP⁺

NADH

NADPH

(R)-NADHX

(S)-NADHX

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2E,5Z)-tetradecenoyl-CoA

methylacrylyl-CoA

acetyl-CoA

malonyl-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

2-methylbutanoyl-CoA

phenylacetyl-CoA

succinyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

hexadecanedioyl-CoA

stearoyl-CoA

palmitoyl-CoA

propanoyl-CoA

butanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-malyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

crotonyl-CoA

(indol-3-yl)acetate

phenylacetate

(+)-7-epi-jasmonate

pyrazinamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

acetamide

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5'-deoxy-5'-fluoroadenosine

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

agmatine

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

trimethyl sulfonium

hydrogencarbonate

phosphate

triphosphate

diphosphate

H⁺

ammonium

Cu²⁺

Cd²⁺

Fe²⁺

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

methanethiol

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

protoheme

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

DNA with lesion

hippurate

ppGpp

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide