an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

dialurate

4-amino-2-methyl-5-pyrimidinemethanol

enol-phenylpyruvate

5-hydroxyindole thiazolidine carboxylate

pyruvic oxime

anthranilate

N-(5-phosphoribosyl)-anthranilate

(R)-mevalonate diphosphate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

α-D-glucosamine 1-phosphate

2-dehydro-3-deoxy-D-gluconate

formamide

O-ureido-L-homoserine

hydroxypyruvate

(R)-5-phosphomevalonate

isopentenyl phosphate

prenyl diphosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

L-β-lysine

ethanolamine

arsenite

ammonia

(R)-mevalonate

aminoacetone

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

3-dehydroshikimate

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

L-arogenate

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

histidinol

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

(R)-1-amino-2-propanol O-2-phosphate

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(R)-1-aminopropan-2-ol

coenzyme F₃₉₀-A

5-(methylsulfanyl)-ribulose 1-phosphate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

isopentenyl diphosphate

carbonic acid

2-phosphoglycolate

hexulose 6-phosphate

L-canavanine

urea

coproporphyrinogen III

4-pyridoxolactone

hydroxylamine

citrate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

salicyl alcohol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

methylamine

hydrogen peroxide

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

β-D-ribosylnicotinate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

urea-1-carboxylate

(L-threonylcarbamoyl)adenylate

glycolate

2-aryl-2-methylmalonate

2-arylpropanoate

CDP-glycerol

α-D-ribose 1,5-bisphosphate

carbon monoxide

β-nicotinate D-ribonucleotide

creatinine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-4'-phosphopantothenate

hydrogen selenide

O-acetyl-L-serine

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

H₂

3-methyl-2-oxobutanoate

2-dehydropantoate

3-phosphooxypyruvate

nicotinate adenine dinucleotide

(S)-dihydroorotate

S-adenosyl 3-(methylsulfanyl)propylamine

4-aminobutanoate

succinate semialdehyde

3-oxopropanoate

oxaloacetate

(lipoyl)adenylate

carbamoyl phosphate

4'-phosphopantetheine

glycerone phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

S-Inosyl-L-homocysteine

4-fumaryl-acetoacetate

acetoacetate

phytyl monophosphate

orotidine 5'-phosphate

(R)-4-phosphopantoate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

CO₂

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

xanthine

phosphoenolpyruvate

H₂O

1,4-dihydroxy-2-naphthoate

(2E,6E)-farnesyl diphosphate

choline

choline sulfate

agmatine

N-acetylputrescine

dehydrospermidine

putrescine

spermidine

tyramine

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

(S)-2-chloropropanoate

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

isobutanoyl-CoA

acetyl-CoA

3'-dephospho-CoA

succinyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

oleoyl-CoA

propanoyl-CoA

acetoacetyl-CoA

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-10

ubiquinol-7

ubiquinol-9

ubiquinol-8

menaquinol-8

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-8

(R)-lipoate

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

oxidized coenzyme F₄₂₀-2

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

nicotinate

pyridoxal

menadione

(S)-1-pyrroline-5-carboxylate

adenine

guanine

2'-deoxyadenosine

2'-deoxyguanosine

xanthosine

inosine

guanosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dATP

dGTP

dIDP

dADP

dGDP

IDP

GDP

ADP

IMP

GMP

XMP

AMP

ITP

ATP

GTP

dTMP

dCMP

dUMP

dTDP

orotate

uracil

dTTP

dCDP

CDP

dUDP

UDP

dCTP

dUTP

UTP

CTP

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

adenosylcobalamin

cob(I)alamin

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

coumarin

scopoletin

4-methylumbelliferone

taxiphyllin

hydrogen cyanide

linustatin

neolinustatin

linamarin

lotaustralin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

4-tyrosol

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

hydroquinone

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

coumarinate

4-aminobenzoate

3-methoxy-4-hydroxyphenylglycol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

L-phenylalanine

L-histidine

L-tryptophan

L-tyrosine

D-aspartate

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

S-sulfanyl-L-cysteine

sarcosine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-citrulline

L-4-hydroxyglutamate semialdehyde

L-glutamate-5-semialdehyde

L-canaline

L-aspartate 4-semialdehyde

S-sulfo-L-cysteine

L-homocysteine

L-cystine

L-homoserine

L-ornithine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-lysine

L-selenocysteine

L-methionine

L-leucine

L-proline

L-asparagine

L-arginine

L-serine

L-aspartate

glycine

L-glutamine

L-glutamate

L-threonine

L-cysteine

L-cystathionine

creatine

(R)-β-lysine

β-alanine

acetate

D-mannonate

(R)-pantoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

chorismate

succinate

fumarate

(S)-malate

cis-aconitate

D-threo-isocitrate

(R)-lactate

(R)-glycerate

formate

propanoate

leukotriene-D4

leukotriene-E4

oleate

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

diacetyl

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

α-D-ribofuranose

butan-1-al

1-propanal

isobutanal

formaldehyde

acetaldehyde

phytenal

myo-inositol

1D-myo-inositol 3-monophosphate

butan-1-ol

ethanol

propan-1-ol

methanol

phytol

glycerol

D-sorbitol

L-iditol

(3R)-linalool

(3S)-linalool

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phytyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

1-(β-D ribofuranosyl)nicotinamide

keto-D-fructose

keto-L-sorbose

N-acetyl-α-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

β-D-cellobiose 6'-phosphate

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

maltotriose

raffinose

maltotetraose

stachyose

maltopentaose

maltoheptaose

maltohexaose

melibiose

sucrose

β-D-cellobiose

D-altronate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

cyclic-AMP

adenylo-succinate

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

2-iminobutanoate

cob(II)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoporphyrinogen IX

S⁰

oxygen

hydrogen sulfide

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

trimethyl sulfonium

sulfate

selenate

thiosulfate

nitrite

hydrogencarbonate

chloride

phosphate

triphosphate

diphosphate

ammonium

H⁺