an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

L-histidinol phosphate

thiamine diphosphate

4-aminobutanoate

N-succinyl-L,L-2,6-diaminopimelate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

carbonic acid

(2E)-2-hydroxypenta-2,4-dienoate

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

succinate semialdehyde

diethylthiophosphate

diethylphosphate

dimethylthiophosphate

3-dehydroshikimate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-phosphooxypyruvate

hexulose 6-phosphate

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

chloramphenicol

isopentenyl diphosphate

prenyl diphosphate

O-acetyl-L-serine

acetyl phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

L-canavanine

canavaninosuccinate

L-arginino-succinate

glycolate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

prephenate

nicotinate adenine dinucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

2-iminoacetate

O-ureido-L-homoserine

citrate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

histidinol

coproporphyrinogen III

7,8-diaminopelargonate

dethiobiotin

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

propanoyl phosphate

S-ribosyl-L-homocysteine

autoinducer 2

urea

(R)-4'-phosphopantothenate

2,6-dioxo-6-phenylhexa-3-enoate

2-oxopent-4-enoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

3-methyl-2-oxobutanoate

2-dehydropantoate

(R)-pantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

(S)-dihydroorotate

orotidine 5'-phosphate

carbamoyl phosphate

carboxyphosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

phosphoenolpyruvate

4'-phosphopantetheine

oxalosuccinate

hydrogen peroxide

glycerone phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

xanthine

DNA without lesion

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(lipoyl)adenylate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

H₂O

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

oxaloacetate

γ-L-glutamyl 5-phosphate

CO₂

β-nicotinate D-ribonucleotide

quinolinate

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

Mg-protoporphyrin

protoheme

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

preQ₀

parathion

paraoxon

4-nitrophenol

chloramphenicol 3-acetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

K⁺

H⁺

ammonium

Zn²⁺

Co²⁺

Fe²⁺

Mg²⁺

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

(2E,6E)-farnesyl diphosphate

glycine betaine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

L-cysteate

3-sulfopyruvate

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

4-hydroxybutanoyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

3'-dephospho-CoA

acetyl-CoA

malonyl-CoA

crotonyl-CoA

butanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

glycocholate

cholate

thiamine

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ppGpp

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

dGMP

dAMP

ITP

XMP

cyclic-AMP

IMP

GMP

GDP

dGTP

dGDP

dATP

dADP

5'-deoxyadenosine

GTP

pppGpp

2'-deoxyguanosine

hypoxanthine

ADP

2'-deoxyadenosine

2'-deoxyinosine

ATP

AMP

xanthosine

guanosine

adenosine

inosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

UMP

CMP

dUDP

dCDP

dTDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

preQ₁

thymine

uracil

guanine

adenine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(R)-lipoate

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

orotate

amino-parathion

methyl parathion

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-aminophenol

protocatechuate

2,3-dihydroxybenzoate

benzoate

diacetyl

methylglyoxal

formaldehyde

butan-1-al

acetaldehyde

D-glyceraldehyde

ethanol

butan-1-ol

glycerol

N-acetyl-α-D-glucosamine 1-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 1,7-bisphosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

succinate

fumarate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

(R)-lactate

butanoate

4-hydroxybutanoate

palmitate

(R)-pantoate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-threonine

L-tyrosine

L-asparagine

L-glutamine

glycine

L-arginine

L-lysine

L-histidine

L-glutamate

L-valine

L-leucine

L-isoleucine

L-alanine

L-tryptophan

L-proline

L-phenylalanine

L-methionine

β-alanine

D-glutamate

D-aspartate

D-alanine

L-cystathionine

L,L-diaminopimelate

L-ornithine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

3-phospho-L-serine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

L-canaline

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

meso-diaminopimelate

D-alanyl-D-alanine