an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

quinolinate

3-dehydroshikimate

3-dehydroquinate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

urea

(R)-4'-phosphopantothenate

(R)-pantothenate

acetoacetate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

thiamine diphosphate

hydrogen peroxide

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

preuroporphyrinogen

5-aminolevulinate

porphobilinogen

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

acetyl phosphate

propanoyl phosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

oxalosuccinate

histidinal

L-canavanine

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

D-erythro-imidazole-glycerol-phosphate

autoinducer 2

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

crotonate

S-ribosyl-L-homocysteine

citrate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-oxopropanoate

4-aminobutanoate

CDP-glycerol

3-deoxy-α-D-manno-2-octulosonate

(S)-4-hydroxy-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

histidinol

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

O-acetyl-L-serine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

γ-L-glutamyl 5-phosphate

oxaloacetate

3-ureidopropanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

5-oxo-L-proline

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-phosphoglycolate

(S)-dihydroorotate

orotidine 5'-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

coproporphyrinogen III

xanthine

urea-1-carboxylate

nicotinate adenine dinucleotide

DNA without lesion

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

5-phospho-β-D-ribosylamine

imidazole acetol-phosphate

L-histidinol phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

glycolate

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

prenyl diphosphate

α-D-glucosamine 1-phosphate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

anthranilate

N-(5-phosphoribosyl)-anthranilate

glycerone phosphate

2-dehydropantoate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

salicyl alcohol

(S)-mandelate

(R)-mandelate

(4S)-4-hydroxy-2-oxoheptanedioate

succinate semialdehyde

3-phosphooxypyruvate

shikimate

shikimate 3-phosphate

phosphoenolpyruvate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

hydroxypyruvate

aminoacetone

H₂O

carbamoyl phosphate

carboxyphosphate

butanoyl phosphate

3-methyl-2-oxobutanoate

CO₂

DNA with lesion

L-homocysteine

phenylacetate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

adenosylcobalamin

cob(I)alamin

adenosyl-cobinamide phosphate

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosylcobyrate

cobalt-sirohydrochlorin

cobalt-precorrin-2

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

Mg-protoporphyrin

protoheme

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

siroheme

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

preQ₀

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

H⁺

K⁺

ammonium

Co²⁺

Fe²⁺

Mg²⁺

Cd²⁺

Ni²⁺

sulfate

hydrogencarbonate

nitrate

phosphonate

phosphate

triphosphate

diphosphate

chloride

(2E,6E)-farnesyl diphosphate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

spermidine

putrescine

spermine

glutathione

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

taurine

(R)-S-lactoylglutathione

3'-dephospho-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

succinyl-CoA

phenylacetyl-CoA

malonyl-CoA

acetyl-CoA

isobutanoyl-CoA

crotonyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

propanoyl-CoA

butanoyl-CoA

cis-vaccenoyl-CoA

palmitoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

acetoacetyl-CoA

nicotinate

riboflavin

thiamine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine

pyridoxamine 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

dGDP

dADP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

ppGpp

pppGpp

dATP

cyclic-AMP

5'-deoxyadenosine

2'-deoxyadenosine

2'-deoxyinosine

hypoxanthine

XMP

IMP

adenylo-succinate

dGTP

2'-deoxyguanosine

GMP

GTP

GDP

AMP

ATP

ADP

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

dUTP

dCTP

dTTP

UTP

CTP

dTMP

dUMP

dCMP

CMP

UMP

dTDP

dCDP

CDP

UDP

β-nicotinamide D-ribonucleotide

ADP-α-D-glucose

preQ₁

thymine

uracil

guanine

adenine

5,6-dihydrouracil

5,6-dihydrothymine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-3A

precorrin-3B

precorrin-4

precorrin-6B

precorrin-6A

precorrin-8x

precorrin-2

precorrin-1

sirohydrochlorin

hydantoin

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

orotate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

protocatechuate

diacetyl

methylglyoxal

butan-1-al

acetaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-ol

methanol

glycerol

D-sorbitol

L-iditol

galactitol 1-phosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

aldehydo-D-galacturonate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

sucrose

keto-D-fructose

keto-L-sorbose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-tagatofuranose 6-phosphate

D-fructose 6-phosphate

keto-L-tagatose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-altronate

D-mannonate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

chorismate

succinate

L-aspartate

fumarate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

acetate

formate

(R)-lactate

butanoate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

palmitate

(R)-pantoate

D-tagaturonate

L-2-aminoadipate

carbamate

L-serine

L-cysteine

L-tyrosine

L-asparagine

glycine

L-threonine

L-glutamine

L-histidine

L-lysine

L-arginine

L-glutamate

L-methionine

L-leucine

L-proline

L-valine

L-isoleucine

L-alanine

L-tryptophan

L-phenylalanine

β-alanine

(R)-3-amino-2-methylpropanoate

D-glutamate

D-alanine

L-cystathionine

L-aspartyl-4-phosphate

L-ornithine

L,L-diaminopimelate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-carbamoylglycine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-canaline

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine