an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-selenocystathionine

glutathione disulfide

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

choline

isopentenyl diphosphate

oxalosuccinate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

DNA without lesion

histidinal

D-erythro-imidazole-glycerol-phosphate

glycerone phosphate

methylsalicylate

7-carboxy-7-deazaguanine

anthranilate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

phosphoenolpyruvate

2-oxoglutaramate

acetyl phosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

S-methyl-5'-thioadenosine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

formamide

N-Formyl-L-kynurenine

hydrogen peroxide

CO₂

S-adenosyl 3-(methylsulfanyl)propylamine

formate

prenyl diphosphate

salicyl alcohol

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

glycolate

oxaloacetate

β-D-ribosylnicotinate

citrate

(S)-dihydroorotate

imidazole acetol-phosphate

carbamoyl phosphate

carboxyphosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

β-nicotinate D-ribonucleotide

L-histidinol phosphate

histidinol

H₂O

succinate semialdehyde

5-dehydro-D-gluconate

2-amino-3-carboxymuconate-6-semialdehyde

D-gluconate 6-phosphate

L-arginino-succinate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

3-methyl-2-oxobutanoate

2-maleylacetate

4-amino-4-deoxychorismate

O-acetyl-L-serine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

L-canavanine

urea

α-D-glucosamine 1-phosphate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

N⁵-carboxyaminoimidazole ribonucleotide

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

aminoacetone

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-phosphooxypyruvate

4-imidazolone-5-propanoate

urocanate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

betaine aldehyde

homogentisate

(2-hydroxyphenyl)acetate

4-fumaryl-acetoacetate

acetoacetate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

L-β-lysine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

N-(5-phosphoribosyl)-anthranilate

orotidine 5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

propanoyl phosphate

(S)-2,3-dihydrodipicolinate

2-C-methyl-D-erythritol 4-phosphate

γ-L-glutamyl 5-phosphate

(R)-4'-phosphopantothenate

dihydroxyacetone

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

pinocembrin chalcone

phloretin

(E)-4-coumaroyl-CoA

xanthine

5-enolpyruvoyl-shikimate 3-phosphate

2-dehydropantoate

(R)-pantothenate

3-dehydroshikimate

4-aminobutanoate

shikimate

shikimate 3-phosphate

butanoyl phosphate

autoinducer 2

nicotinate adenine dinucleotide

prephenate

quinolinate

porphobilinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

coproporphyrinogen III

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

S-ribosyl-L-homocysteine

1,4-dihydroxy-2-naphthoate

3-dehydroquinate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-chloroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

GTP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

GMP

5'-deoxyadenosine

XMP

IMP

AMP

ATP

ADP

dATP

dGTP

dAMP

dGMP

isoguanine

8-oxo-dGTP

adenylo-succinate

8-oxo-GTP

pppGpp

ppGpp

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

dADP

dGDP

GDP

guanosine

inosine

adenosine

xanthosine

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

2-hydroxy-dATP

5-hydroxy-CTP

dCTP

dUTP

dTTP

UTP

CTP

dTMP

dUMP

dCMP

UMP

CMP

dTDP

dCDP

dUDP

UDP

CDP

β-nicotinamide D-ribonucleotide

NADPH

NADH

NADP⁺

NAD⁺

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

cyclic di-3',5'-guanylate

ADP-α-D-glucose

uracil

guanine

adenine

preQ₁

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

(S)-1-pyrroline-5-carboxylate

orotate

dipicolinate

6,7-dimethyl-8-(1-D-ribityl)lumazine

riboflavin

FAD

FMN

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

6-carboxy-5,6,7,8-tetrahydropterin

precorrin-1

precorrin-2

adenosylcobalamin

2',4,4',6'-tetrahydroxychalcone

isoliquiritigenin

6,7-dehydrobaicalein

baicalein

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

salicylate

protocatechuate

2,3-dihydroxybenzoate

4-aminobenzoate

3-acetylamino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

3-amino-4-hydroxybenzoate

3-amino-4-hydroxybenzaldehyde

caldariellaquinol

demethylmenaquinol-8

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-isobutyl-4-hydroxy-2-pyrone

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,5-piperidinedione

caldariellaquinone

methylglyoxal

glycolaldehyde

α-D-xylopyranose

β-D-galactopyranose

α-D-galactopyranose

formaldehyde

1-propanal

butan-1-al

acetaldehyde

phytenal

propan-1-ol

methanol

ethanol

butan-1-ol

phytol

glycerol

1-(β-D ribofuranosyl)nicotinamide

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

daunorubicin

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-galactose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

D-gluconate

L-idonate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-2-palmitoyl-phosphatidylglycerol

all-trans-retinol

all-trans-retinyl palmitate

geranyl diphosphate

(2E,6E)-farnesyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

iron(III) dicitrate

betanidin

betanidin quinone

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

decanoate

7-hydroxylaurate

laurate

octanoate

acetate

(R)-pantoate

carbamate

D-alanine

D-glutamate

L-ornithine

S-allyl-L-cysteine

S-trans-1-propenyl-L-cysteine

L-histidine

L-alanine

L-serine

L-tryptophan

L-cystathionine

L-glutamine

L-glutamate

L-proline

L-cysteine

L-arginine

L-isoglutamine

L-tyrosine

L-leucine

L-lysine

L-aspartyl-4-phosphate

L-methionine

L-aspartate

L-phenylalanine

L-threonine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

seleno-L-homocysteine

2-hydroxy-5-oxoproline

L-2-amino-3-oxobutanoate

S-methyl-L-cysteine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-homocysteine

L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-canaline

O-phospho-L-homoserine

meso-diaminopimelate

glycine

(R)-β-lysine

β-alanine

(2R,3S)-2-methylisocitrate

(R)-lactate

(15Z)-tetracosenoate

butanoate

linoleate

α-linolenate

pristanate

stearate

palmitate

oleate

phytenate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

cis-aconitate

cis-2-methylaconitate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

pyruvate

2-oxoglutarate

glyoxylate

2-oxobutanoate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

nitrate

hydrogencarbonate

hydrogensulfite

thiosulfate

sulfite

superoxide

OH^-

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

H⁺

ammonium

Zn²⁺

Co²⁺

Mn²⁺

Fe²⁺

Mg²⁺

α-D-glucosamine 6-phosphate

hydroxyl radical

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

spermidine

putrescine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-(hydroxymethyl)glutathione

glutathione

methanethiol

thiocyanate

S-sulfanylglutathione

L-cysteate

3-sulfopyruvate

malonyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

(+)-7-epi-jasmonoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

acetyl-CoA

3'-dephospho-CoA

dihydro-4-coumaroyl-CoA

isovaleryl-CoA

5-aminolevulinyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(E)-cinnamoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

cis-dienelactone

trans-dienelactone

ethene

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

thiamine

nicotinate

cob(I)alamin

(R)-NADHX

(S)-NADHX

glycine betaine

preQ₀

hydrogen cyanide

DNA with lesion

ethylphosphate

Mg-protoporphyrin

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminobutanoate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate