an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

4-oxalocrotonate

1-piperideine-2-carboxylate

(2E)-2-hydroxypenta-2,4-dienoate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

picolinate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

5-aminopentanoate

4-oxoglutaramate

selenodiglutathione

glutathioselenol

isopropylamine

2-keto-L-gulonate

1,4-dihydroxy-2-naphthoate

(2Z,4E)-2-aminomuconate

pyruvic oxime

6-(2-amino-2-carboxylatoethyl)-7-hydroxy-8-oxo-1,2,3,4,7,8-hexahydroquinoline-2,4-dicarboxylate

2-amino-4-[5-(2-amino-2-carboxylatoethyl)-2-hydroxyphenyl]pentanedioate

2-amino-4-[3-(2-amino-2-carboxylatoethyl)-6-oxocyclohexa-1,4-dien-1-yl]pentanedioate

6-(2-amino-2-carboxylatoethyl)-1,2,3,4-tetrahydroquinoline-2,4-dicarboxylate

autoinducer 2

vanillin

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

protoanemonin

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

3-hydroxy-4-methylbenzaldehyde

5-(hydroxymethyl)-2-methylphenol

thiamine diphosphate

preuroporphyrinogen

6-aminohexanoate cyclic dimer

6-oxohexanoate

adipate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

2,6-dioxo-6-phenylhexa-3-enoate

3-(2,3-dihydroxyphenyl)propanoate

3-(3-hydroxyphenyl)propanoate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

maleamate

creatinine

N-methylhydantoin

5-amino-6-(5-phospho-D-ribitylamino)uracil

naphthalene-1,2-diol

2-hydroxy-5-carboxymethylmuconate semialdehyde

glutathione disulfide

3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon

2,5,6-trihydroxy-3-methylpyridine

2-oxobut-3-enanoate

5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline

5,6-dihydrodiol-3-methyl-2-oxo-1,2-dihydroquinoline

hydrogen selenide

5,6-dimethylbenzimidazole

dialurate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

5-androstene-3,17-dione

5-α-androstan-3β,17β-diol

pregn-5-ene-3,20-dione-17-ol

pregn-5-ene-3,20-dione

glutathionylspermidine

L-selenocystathionine

N-acetyl-D-muramate 6-phosphate

3-methylquinoline

3-methyl-2-oxo-1,2-dihydroquinoline

8-choloroquinoline

8-chloroquinolin-2(1H)-one

quinolin-7-ol

7-hydroxyquinolin-2(1H)-one

8-methylquinoline

8-methylquinolin-2(1H)-one

quinolin-6-ol

6-hydroxyquinolin-2(1H)-one

4-methylquinoline

4-methylquinolin-2(1H)-one

quinoline

quinolin-2(1H)-one

8-hydroxyquinoline

8-hydroxyquinolin-2(1H)-one

presqualene diphosphate

8-amino-7-oxononanoate

7,8-diaminopelargonate

dethiobiotin

xanthine

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(1R,2S)-1,2-dihydronaphthalene-1,2-diol

(R)-4-phosphopantoate

O-ureido-L-homoserine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

trans-O-hydroxybenzylidenepyruvate

N-formylmaleamate

6-hydroxynicotinate

2,5-dihydroxypyridine

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

carboxyphosphate

α-D-glucosamine 1-phosphate

nicotine-1'-N-oxide

N,N-dimethylaniline

N,N-dimethylaniline-N-oxide

6-amino-2-oxohexanoate

β-D-fructose 2,6-bisphosphate

3-deoxy-α-D-manno-2-octulosonate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

urea

3-ureidopropanoate

ADP-D-glycero-β-D-manno-heptose

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

squalene

hop-22(29)-ene

(2-hydroxyphenyl)acetate

(S)-4-hydroxy-2-oxopentanoate

propanoyl phosphate

1,6-anhydro-N-acetyl-β-muramate

(+)-muconolactone

3-methylmuconolactone

muconolactone

cis,cis-muconate

6-aminohexanoate linear dimer

6-aminohexanoate

(R)-mevalonate

formamide

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

N^β-acetylstreptothricin F

3-mercaptopyruvate

α-D-galactosyl-diphosphoundecaprenol

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

5-phospho-β-D-ribosylamine

3'-phosphoadenylyl-sulfate

6-phospho D-glucono-1,5-lactone

histidinal

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

ethanolamine

4-aminobutanoate

3-propylcatechol

2-hydroxy-6-oxo-nona-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

homogentisate

4-maleyl-acetoacetate

4,5-dihydroxyphthalate

3-maleylpyruvate

4-methylgentisate

(2E)-3-methyl-4,6-dioxohept-2-enedioate

3-methylgentisate

(2E)-2-methyl-4,6-dioxohept-2-enedioate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(4-hydroxyphenyl)-2-oxoacetate

4-hydroxybenzaldehyde

phenylglyoxylate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

aminoacetone

oxalosuccinate

coenzyme F₃₉₀-A

butyramide

pimelate

pimeloyl-CoA

DNA without lesion

D-gluconate 6-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

5-methylsalicylate

4-methylsalicylate

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate 3-phosphate

5-aminolevulinate

porphobilinogen

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

carbamoyl phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

(R)-1-amino-2-propanol O-2-phosphate

α-ribazole

α-ribazole 5'-phosphate

4-amino-4-deoxychorismate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

lipid IV_A

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

3-deoxy-D-glycero-2,5-hexodiulosonate

(lipoyl)adenylate

(R)-pantothenate

(R)-4'-phosphopantothenate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

4-fumaryl-acetoacetate

2-aminoacetaldehyde

(E)-3-(methoxycarbonyl)pent-2-enedioate

hydroxypyruvate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

sinapate

sinapoyl-CoA

5-hydroxyferulate

5-hydroxy-feruloyl-CoA

2,4'-dihydroxyacetophenone

6-(2-amino-2-carboxyethyl)-7,8-dioxo-1,2,3,4,7,8-hexahydroquinoline 2,4-dicarboxylate

phosphonoacetate

2-dehydropantoate

ammonia

hydroxylamine

3-phosphooxypyruvate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

3-oxopropanoate

2-oxopent-4-enoate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

2-oxoadipate

glycerone phosphate

3-dehydroquinate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

γ-L-glutamyl 5-phosphate

N²-succinylglutamate

(4-hydroxyphenyl)acetate

N-(5-phosphoribosyl)-anthranilate

S-ribosyl-L-homocysteine

(S)-4-amino-5-oxopentanoate

(S)-2-amino-6-oxohexanoate

2-methyl-4-chlorophenol

phthalate

phthalate 4,5-cis-dihydrodiol

(S)-dihydroorotate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

coniferaldehyde

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

5-guanidino-2-oxopentanoate

2-phosphoglycolate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

7-carboxy-7-deazaguanine

anthranilate

3-hydroxyanthranilate

N-Formyl-L-kynurenine

5-oxo-L-proline

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

2-maleylacetate

2-C-methyl-D-erythritol 4-phosphate

O-acetyl-L-serine

carbonic acid

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

5-enolpyruvoyl-shikimate 3-phosphate

isopentenyl diphosphate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

phosphoenolpyruvate

choline

2-dehydro-3-deoxy-D-gluconate 6-phosphate

S-formylglutathione

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

2,5-dioxopentanoate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

ADP-L-glycero-β-D-manno-heptose

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-amino-6-(D-ribitylamino)uracil

5-dehydro-D-gluconate

4-methyl-2-oxopentanoate

5-methylcytosine

nicotinate adenine dinucleotide

2-keto-D-gluconate

2,5-didehydro-D-gluconate

3-hydroxypropanoate

4'-phosphopantetheine

N,N-dimethyl-1,4-phenylenediamine

citrate

4-hydroxy-2-nonenal

orotidine 5'-phosphate

coproporphyrinogen III

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

betaine aldehyde

5-carboxymethyl-2-hydroxymuconate

(4Z)-2-oxohept-4-enedioate

(4S)-4-hydroxy-2-oxoheptanedioate

tartronate semialdehyde

β-D-ribosylnicotinate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

hydrogen peroxide

glycolate

lipid X

lipid A disaccharide (E. coli)

5-dehydro-4-deoxy-D-glucarate

(S)-mandelate

(R)-mandelate

prephenate

hydroxyatrazine

N-isopropylammelide

ethylamine

acetyl phosphate

2,3-epoxy-2,3-dihydrobenzoyl-CoA

cis-3,4-dehydroadipyl-CoA semialdehyde

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

2-dehydro-3-deoxy-D-gluconate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

urea-1-carboxylate

isoquinoline

isoquinolin-2(1H)-one

citraconate

(2R,3S)-3-methylmalate

oxalate

(S)-ureidoglycolate

CO₂

β-nicotinate D-ribonucleotide

quinolinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

succinate semialdehyde

4-imidazolone-5-propanoate

urocanate

3-methyl-2-oxobutanoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

oxaloacetate

shikimate

3-dehydroshikimate

acetoacetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

formate

(2S)-2-isopropylmalate

2-isopropylmaleate

H₂O

(2R,3S)-3-isopropylmalate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

(Z)-phenylacetaldehyde oxime

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

hydrogen cyanide

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

Mg-protoporphyrin

adenosyl-cobinamide phosphate

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

3-(all-trans-heptaprenyl)benzene-1,2-diol

3-(all-trans-nonaprenyl)benzene-1,2-diol

3-(all-trans-decaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-heptaprenylphenol

2-nonaprenylphenol

2-decaprenylphenol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

2-methoxy-6-(all-trans-heptaprenyl)phenol

2-methoxy-6-(all-trans-nonaprenyl)phenol

6-(all-trans-decaprenyl)-2-methoxy-phenol

3-cyanopyridine

(indole-3-yl)acetonitrile

propionitrile

preQ₀

acrylonitrile

n-butyronitrile

phenylacetonitrile

2-nitrobenzoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

3-chloro-cis,cis-muconate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

4-chlorosalicylate

5-chlorosalicylate

4-chlorocatechol

2,4-dichlorophenol

3,5-dichlorocatechol

5-chloro-3-methylcatechol

Fe³⁺

ammonium

H⁺

K⁺

Mg²⁺

Co²⁺

Fe²⁺

Mo²⁺

hydrogensulfite

selenite

OH^-

thiosulfate

sulfate

superoxide

nitrite

sulfite

selenate

hydrogencarbonate

nitrate

molybdate

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

1-oleoyl-2-palmitoyl-phosphatidylglycerol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

aniline

N-acetylputrescine

putrescine

spermidine

3-acetylamino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

3-amino-4-hydroxybenzoate

3-amino-4-hydroxybenzaldehyde

S-(hydroxymethyl)glutathione

taurine

sulfoacetaldehyde

L-cysteate

3-sulfopyruvate

glutathione amide perthiol

methanethiol

glutathione amide

glutathione amide disulfide

thiocyanate

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

dodecyl sulfate

3-sulfocatechol

(R)-S-lactoylglutathione

3-sulfino-L-alanine

cis-dienelactone

trans-dienelactone

2-methylbutanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(3S)-citryl-CoA

salicyl-CoA

gentisyl-CoA

anthraniloyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

isovaleryl-CoA

acryloyl-CoA

trans-caffeoyl-CoA

2-methylacetoacetyl-CoA

3'-dephospho-CoA

phenylacetyl-CoA

4-hydroxybenzoyl-CoA

succinyl-CoA

isobutanoyl-CoA

3-hydroxypropanoyl-CoA

dihomo γ-linolenoyl-CoA

malonyl-CoA

trans-feruloyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

formyl-CoA

oxalyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytanoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxyoleoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

icosanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

tributyrin

1,2-dibutyrin

ethene

methane

cholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

progesterone

cholest-5-en-3-one

17-α-hydroxyprogesterone

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

campesterol

(+)-7-epi-jasmonate

(indol-3-yl)acetate

nicotinamide

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FAD

FADH₂

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-7

ubiquinol-9

ubiquinol-10

ubiquinol-8

menaquinol-9

menaquinol-8

menaquinol-10

menaquinol-6

menaquinol-7

menaquinol-12

menaquinol-13

menaquinol-11

demethylmenaquinol-9

demethylmenaquinol-8

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-12

demethylmenaquinol-13

demethylmenaquinol-11

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-8

glycine betaine

isoguanine

8-oxo-GTP

8-oxo-GMP

2'-deoxyinosine

2'-deoxyadenosine

dIDP

dITP

IDP

cyclic-GMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

2'-deoxyguanosine

dGTP

dGMP

dATP

dAMP

ITP

dADP

dGDP

hypoxanthine

8-oxo-dGTP

8-oxo-dGMP

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

cyclic-AMP

pppGpp

ppGpp

GDP

5'-deoxyadenosine

XMP

GMP

IMP

ADP

ATP

AMP

GTP

5-fluorocytosine

5-fluorouracil

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

CTP

UTP

dTMP

dCMP

dUMP

UMP

CMP

dTDP

dCDP

dUDP

CDP

UDP

β-nicotinamide D-ribonucleotide

uridine 3'-monophosphate

cytidine-3'-monophosphate

GDP-α-D-mannuronate

GDP-4-dehydro-6-deoxy-β-L-galactose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

ADP-α-D-glucose

preQ₁

cytosine

uracil

thymine

guanine

adenine

5,6-dihydrouracil

5,6-dihydrothymine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

CDP-4-dehydro-6-deoxy-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

oxidized coenzyme F₄₂₀-2

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-3A

precorrin-1

precorrin-2

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-4a-hydroxy-tetrahydrobiopterin

orotate

2-hydroxychromene-2-carboxylate

quercetin

cyanuric acid

2-propylphenol

2-hydroxylaminobenzoate

urate

naphthalene

3-hexaprenyl-4-hydroxybenzoate

biphenyl

salicylaldehyde

4-hydroxyacetophenone

4-hydroxybenzoate

atrazine

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,5-xylenol

3-hydroxy-5-methylbenzaldehyde

3-(hydroxymethyl)-5-methylphenol

3,5-xylenol

phenol

hydroquinone

2,3-dihydroxybenzoate

biphenyl-2,3-diol

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

3,4-dihydroxyphenylacetate

L-dopa

3-methylcatechol

catechol

4-methylcatechol

protocatechuate

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

6-methoxy-3-methyl-2-all-trans-heptaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-nonaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-heptaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-nonaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

4-coumarate

ferulate

trans-caffeate

trans-cinnamate

salicylate

vanillate

3-hydroxy-4-methyl-benzoate

3-hydroxy-5-methyl-benzoate

benzoate

4-aminobenzoate

diacetyl

acetone

pyrroloquinoline quinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

methylglyoxal

formaldehyde

acetaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

α-L-arabinopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

β-D-galactopyranose

α-D-galactopyranose

hydroxyquinol

methanol

ethanol

1-dodecanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

3,5-cyclohexadiene-1,2-diol-1-carboxylate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

aldehydo-D-galacturonate

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

4-deoxy-L-threo-hex-4-enopyranuronate

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-gluconate

L-idonate

D-mannonate

D-altronate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

3-oxo-24-ethyl-cholest-5-ene

3-oxo-24-ethyl-cholest-4-ene

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

(S)-nicotine

streptothricin F

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

6-caprolactam

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

(3E)-2-oxohex-3-enedioate

chorismate

maleate

fumarate

succinate

L-aspartate

(S)-malate

D-glucarate

D-galactarate

α,ω-9Z-octadecenedioate

3-(carbamoylamino)-2-methylpropanoate

cis-2-methylaconitate

trans-aconitate

cis-aconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

pyruvate

propanoate

butanoate

decanoate

octanoate

laurate

7-hydroxylaurate

gentisate

4-hydroxybutanoate

(R)-3-hydroxybutanoate

(R)-lactate

(15Z)-tetracosenoate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

myristate

arachidate

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

oleate

palmitate

stearate

α-linolenate

linoleate

di-homo-γ-linolenate

phytenate

(R)-pantoate

acetate

D-tagaturonate

L-α-amino-ε-keto-pimelate

carbamate

L-2-aminoadipate

L-kynurenine

L-serine

L-cysteine

L-threonine

L-glutamine

glycine

L-tyrosine

L-histidine

L-arginine

L-lysine

L-glutamate

L-methionine

L-isoleucine

L-leucine

L-valine

L-tryptophan

L-alanine

L-phenylalanine

L-proline

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

D-glutamate

D-lysine

cis-4-hydroxy-D-proline

D-proline

D-arginine

D-alanine

D-aspartate

L-isoglutamine

L-cystathionine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

L-saccharopine

iminoarginine

L-threonine 3-O-phosphate

3-phospho-L-serine

sarcosine

N-carbamoylglycine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N⁵-hydroxy-L-ornithine

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-canaline

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

1-aminocyclopropane-1-carboxylate

O-phospho-L-homoserine

L-homoserine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

hypoglycin A

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine