ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C6444

oxaloacetate

C11543

H2O

C11479

phosphoenolpyruvate

C10349

glycerone phosphate

C928

CO2

C996

adenosine 5'-phosphosulfate

C192

adenosine 5'-phosphoselenate

C2191

carbamoyl phosphate

C6099

lipid IVA

C10794

lipid A disaccharide (E. coli)

C13627

DNA without lesion

C1528

2-dehydropantoate

C3262

3-methyl-2-oxobutanoate

C1325

4-amino-4-deoxychorismate

C12054

L-dehydro-ascorbate

C891

citrate

C9422

nicotinate adenine dinucleotide

C11857

β-nicotinate D-ribonucleotide

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1265

4-phosphooxy-L-threonine

C12162

hydrogen peroxide

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C6369

(S)-2-aceto-2-hydroxybutanoate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C6359

(S)-2-acetolactate

C11639

succinate semialdehyde

C1078

(S)-2-amino-6-oxohexanoate

C11654

selenophosphate

C873

coproporphyrinogen III

C11715

quinolinate

C12192

carbonic acid

C12048

γ-L-glutamyl 5-phosphate

C14924

carboxyphosphate

C11483

glycolate

C11874

N-succinyl-2-amino-6-ketopimelate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C3314

2-dehydro-3-deoxy-D-galactonate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C11557

urocanate

C1285

4-imidazolone-5-propanoate

C12390

D-erythro-imidazole-glycerol-phosphate

C1283

4-maleyl-acetoacetate

C12171

homogentisate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C14181

2-maleylacetate

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C6349

3-oxopropanoate

C1407

3-hydroxypropanoate

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C12088

isoquinolin-2(1H)-one

C12086

isoquinoline

C3888

7-carboxy-7-deazaguanine

C12369

3-dehydroquinate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C6361

acetoacetate

C15213

D-galacto-hexodialdose

C1438

(2S)-2-isopropylmalate

C3259

2-oxovalerate

C506

3-ethylmalate

C3319

4-methyl-2-oxopentanoate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C1530

(2R,3S)-3-isopropylmalate

C11634

tartronate semialdehyde

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C12176

histidinol

C12178

histidinal

C11802

4'-phosphopantetheine

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C13417

2-isopropylmaleate

C11964

(R)-mevalonate

C12324

autoinducer 2

C12029

S-ribosyl-L-homocysteine

C1196

S-methyl-5'-thioadenosine

C12370

2-dehydro-3-deoxy-D-galactonate 6-phosphate

C3344

2-dehydro-3-deoxy-D-gluconate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C4674

glutathione disulfide

C13854

hydrogen selenide

C4688

glutathioselenol

C4690

selenodiglutathione

C13702

1-piperideine 6-carboxylate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C1024

aminoacetone

C9431

1,2-dihydro-β-NADP

C158

cyclic-2,3-O-oxalyl-L-threonate

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C1010

ammonia

C163

dehydroascorbate (bicyclic form)

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C162

cyclic- 3,4-O-oxalyl-L-threonate

C14153

2,3-dioxo-L-gulonate

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C159

2-carboxy-L-xylonolactone

C160

2-carboxy-L-threo-pentonate

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C6437

3-phospho-D-glyceroyl-phosphate

C11476

(R)-glycerate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C11281

2-chloroacetate

C6596

2-iminosuccinate

C6708

2-iminopropanoate

C6599

2-iminobutanoate

C7121

oxygen

C9865

Mg-protoporphyrin

C7676

protoporphyrin IX

C7666

protoporphyrinogen IX

C7672

coproporphyrinogen I

C7662

uroporphyrinogen-I

C7658

uroporphyrinogen-III

C6624

protoheme

C11480

phenylacetate

C12247

L-homocysteine

C10799

DNA with lesion

C1434

D-alanyl-D-alanine

C5032

carbamate

C3530

L-2-aminoadipate

C3536

L-α-amino-ε-keto-pimelate

C5583

L-methionine

C12067

glycine

C5581

L-proline

C5607

L-glutamate

C5609

L-glutamine

C5596

L-aspartate

C5605

L-histidine

C5579

L-serine

C5584

L-lysine

C5577

L-threonine

C5588

L-leucine

C5597

L-alanine

C5575

L-tryptophan

C5571

L-valine

C5573

L-tyrosine

C5612

L-cysteine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12231

L-ornithine

C12233

L-glutamate-5-semialdehyde

C12229

O-phospho-L-homoserine

C12245

L-homoserine

C12239

L-aspartate 4-semialdehyde

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C5585

meso-diaminopimelate

C12201

L-2-amino-3-oxobutanoate

C12065

L-saccharopine

C12073

L-aspartyl-4-phosphate

C10821

trans-4-hydroxy-L-proline

C13322

N-carbamoyl-L-aspartate

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C8797

D-glutamate

C8799

D-alanine

C11441

β-alanine

C8974

4-aminobenzoate

C11487

D-mannonate

C11481

orotate

C11482

(R)-pantoate

C4985

(S)-1-pyrroline-5-carboxylate

C2774

pristanate

C3383

palmitate

C3387

stearate

C3412

decanoate

C3415

laurate

C3207

7-hydroxylaurate

C3409

octanoate

C538

18-hydroxyoleate

C553

16-hydroxypalmitate

C550

18-hydroxystearate

C13260

phytenate

C13266

(15Z)-tetracosenoate

C13210

oleate

C6379

linoleate

C10590

α-linolenate

C6185

(R)-lactate

C3308

pyruvate

C3421

formate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C8950

chorismate

C8923

α,ω-9Z-octadecenedioate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C11313

6-aminopenicillanate

C1599

penicillin G

C1626

isopenicillin N

C8321

geranyl diphosphate

C5128

2-trans, 4-trans-undecadienoyl-CoA

C5113

4-trans-undecenoyl-CoA

C5104

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

C5106

5-cis, 7-trans-tetradecadienoyl-CoA

C5629

(5Z)-tetradecenoyl-CoA

C5123

2-trans,6-cis-tridecadienoyl-CoA

C5148

6-cis-tridecenoyl-CoA

C5141

2-trans, 4-cis-undecadienoyl-CoA

C5119

4-cis-undecenoyl-CoA

C5117

2-trans-6-trans-tridecadienoyl-CoA

C5145

6-trans-tridecenoyl-CoA

C3682

D-galactonate

C1939

dTDP-α-D-glucose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C8666

UDP-α-D-galactose

C7780

UDP-α-D-glucose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7822

UDP-N-acetyl-α-D-muramate

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C2082

β-D-fructofuranose 1-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C8704

D-xylulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C8835

β-D-fructofuranose

C2108

β-D-galactopyranose

C9494

D-glyceraldehyde

C2061

α-D-ribofuranose

C2012

keto-D-fructose

C7973

3,6-anhydro-α-L-galactopyranose

C7967

3,6-anhydro-L-galactofuranose

C2143

D-xylulose

C3704

agarotriose

C3707

agaropentaose

C3697

neoagarohexaose

C3700

neoagarotetraose

C3696

neoagarobiose

C6090

methylglyoxal

C3500

acetaldehyde

C10048

caldariellaquinone

C2040

diacetyl

C1869

caldariellaquinol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9454

adenine

C7809

AMP

C7741

IMP

C7827

GMP

C7811

XMP

C7844

ATP

C7745

GTP

C7759

ITP

C7757

ADP

C7795

GDP

C7817

IDP

C7807

dGDP

C7747

dIDP

C7823

dADP

C7751

dGTP

C7749

dITP

C7783

dATP

C7840

dGMP

C7743

dAMP

C15088

adenosine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C14603

tetrahydromethanopterin

C5578

6-carboxy-5,6,7,8-tetrahydropterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C14624

5,10-methylene-tetrahydromethanopterin

C10597

7,8-dihydrofolate monoglutamate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C9540

preQ1

C7649

isoguanine

C8761

CTP

C8760

UTP

C8724

dUTP

C8752

dUDP

C8732

CDP

C8772

dCTP

C8733

dCDP

C8714

UDP

C8764

dTTP

C8720

dTDP

C8744

dTMP

C8770

dUMP

C8755

dCMP

C2241

UMP

C2245

CMP

C2527

2'-deoxyuridine

C2519

thymidine

C2523

2'-deoxycytidine

C10614

coenzyme A

C10288

adenylo-succinate

C5552

5'-deoxyadenosine

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7655

8-oxo-GTP

C7647

8-oxo-dGTP

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C4020

NAD+

C4018

NADP+

C14500

NADH

C14497

NADPH

C5392

(S)-NADHX

C5394

(R)-NADHX

C10982

nicotinate

C4572

(25S)-3-oxocholest-4-en-26-oyl-CoA

C4520

(25S)-3-oxocholest-4-en-26-oate

C5298

acetyl-CoA

C4913

malonyl-CoA

C5279

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

C5281

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

C5274

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

C5275

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

C4945

(2E,5Z)-tetradecenoyl-CoA

C5266

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

C5268

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

C4937

3'-dephospho-CoA

C4901

succinyl-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C5635

oleoyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C5892

palmitoyl-CoA

C5885

stearoyl-CoA

C491

18-hydroxyoleoyl-CoA

C480

18-hydroxystearoyl-CoA

C2873

pristanoyl-CoA

C3141

2-hydroxyphytanoyl-CoA

C10623

phytanoyl-CoA

C14677

octanoyl-CoA

C14697

decanoyl-CoA

C14674

lauroyl-CoA

C11187

7-hydroxylauroyl-CoA

C1177

propanoyl-CoA

C11399

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

C7172

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

C7155

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C11400

phytenoyl-CoA

C4299

(2E)-oct-2-enoyl-CoA

C11402

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

C5919

(S)-methylmalonyl-CoA

C10100

trans-dienelactone

C10102

cis-dienelactone

C4678

glutathione

C3574

spermidine

C3548

putrescine

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C8958

superoxide

C8965

hydroxyl radical

C7864

Fe3+

C11009

Mg2+

C11023

Fe2+

C4328

ammonium

C4320

H+

C7036

hydrogencarbonate

C7020

selenate

C7022

selenide

C7025

OH-

C7017

selenite

C7014

sulfate

C7006

chloride

C6762

phosphonate

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C13354

preQ0