an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

CO₂

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

N-acetylglutamyl-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

phosphoenolpyruvate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

γ-L-glutamyl 5-phosphate

carbamoyl phosphate

5-enolpyruvoyl-shikimate 3-phosphate

oxalosuccinate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

citrate

oxaloacetate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

aminoacetone

urea

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

prephenate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

4'-phosphopantetheine

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

3-deoxy-D-glycero-2,5-hexodiulosonate

urocanate

4-imidazolone-5-propanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

4-hydroxy-2-nonenal

8-amino-7-oxononanoate

pimeloyl-CoA

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

β-nicotinate D-ribonucleotide

hydrogen peroxide

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2-hydroxyphenyl)acetate

homogentisate

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

DNA without lesion

2-dehydropantoate

carbonic acid

propanoyl phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

3-hydroxyanthranilate

anthranilate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

isopentenyl diphosphate

5-oxo-L-proline

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

shikimate 3-phosphate

shikimate

O-acetyl-L-serine

nicotinate adenine dinucleotide

2-maleylacetate

S-methyl-5'-thioinosine

S-methyl-5'-thioadenosine

acetoacetate

7-carboxy-7-deazaguanine

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

glycerone phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

N-succinyl-L,L-2,6-diaminopimelate

quinolinate

hydrogen selenide

3-dehydroquinate

3-dehydroshikimate

N-acetyl-L-glutamate 5-semialdehyde

carboxyphosphate

N-Formyl-L-kynurenine

(R)-pantothenate

4-methyl-2-oxopentanoate

glutathione disulfide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2,6-dioxo-6-phenylhexa-3-enoate

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

histidinal

histidinol

L-histidinol phosphate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

glutathioselenol

selenodiglutathione

4-oxoglutaramate

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

oxygen

hydrogen sulfide

DNA with lesion

sn-glycerol 3-phosphate

L-homocysteine

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

2-iminobutanoate

2-iminosuccinate

(S)-3-hydroxy-isobutanoate

(glutathion-S-yl)-4-hydroxy-2-nonenal

3-(all-trans-octaprenyl)benzene-1,2-diol

L-kynurenine

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-methionine

L-aspartate

L-tryptophan

L-serine

L-glutamate

L-glutamine

L-threonine

L-histidine

L-leucine

L-alanine

L-isoleucine

L-proline

glycine

L-lysine

L-tyrosine

L-asparagine

L-valine

L-arginine

L-cysteine

S-adenosyl-L-homocysteine

L-homoserine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

L-ornithine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L,L-diaminopimelate

L-isoglutamine

β-alanine

(S)-3-amino-2-methylpropanoate

4-aminobenzoate

benzoate

acetate

5-chloro-5-deoxy-D-ribonate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

4-deoxy-L-threo-hex-4-enopyranuronate

pristanate

palmitate

stearate

octanoate

laurate

7-hydroxylaurate

decanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

(15Z)-tetracosenoate

oleate

phytenate

linoleate

α-linolenate

(R)-lactate

pyruvate

formate

propanoate

2-oxoglutarate

2-oxobutanoate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

cis-aconitate

D-threo-isocitrate

chorismate

(3E)-2-oxohex-3-enedioate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

(2E,6E)-farnesyl diphosphate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

5-dehydro-4-deoxy-D-glucuronate

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

CMP-N-acetyl-β-neuraminate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

α-D-mannose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-neuraminate

glycerol

biphenyl-2,3-diol

ethanol

methanol

methylglyoxal

acetaldehyde

formaldehyde

menadione

caldariellaquinone

diacetyl

biphenyl

4-hydroxybenzoate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

ubiquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dIDP

dADP

dGTP

dITP

dATP

hypoxanthine

adenosine

tetrahydromethanopterin

6-carboxy-5,6,7,8-tetrahydropterin

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FADH₂

FMN

riboflavin

FAD

uracil

thymine

preQ₁

isoguanine

UTP

dUTP

dUDP

CTP

CDP

dCTP

dCDP

UDP

dTTP

dTDP

dTMP

dUMP

dCMP

CMP

UMP

thymidine

2'-deoxyuridine

2'-deoxycytidine

coenzyme A

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-dGTP

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

(S)-NADHX

(R)-NADHX

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

acetyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3'-dephospho-CoA

isobutanoyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

3-methylglutaconyl-CoA

(2R)-ethylmalonyl-CoA

(2S)-ethylmalonyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

2-hydroxyphytanoyl-CoA

phytanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

decanoyl-CoA

propanoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

S-(hydroxymethyl)glutathione

glutathione

methanethiol

cadaverine

putrescine

N-acetylputrescine

(2Z)-2-aminobut-2-enoate

superoxide

hydroxyl radical

Fe³⁺

Fe²⁺

ammonium

H⁺

selenate

hydrogencarbonate

OH^-

selenite

sulfate

chloride

phosphate

diphosphate

triphosphate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

preQ₀

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine