an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

selenodiglutathione

glutathioselenol

hydrogen selenide

glutathione disulfide

1,4-dihydroxy-2-naphthoyl-CoA

1,4-dihydroxy-2-naphthoate

(R)-pantothenate

(R)-4'-phosphopantothenate

N-succinyl-L,L-2,6-diaminopimelate

shikimate 3-phosphate

N-acetyl-D-muramate 6-phosphate

(S)-2-amino-6-oxohexanoate

glycolate

urea-1-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

lipid IV_A

2-dehydropantoate

orotidine 5'-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N-(5-phosphoribosyl)-anthranilate

anthranilate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

4-aminobutanoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

7-carboxy-7-deazaguanine

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

4-fumaryl-acetoacetate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

N-Formyl-L-kynurenine

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

quinolinate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-4-deoxychorismate

α-D-glucosamine 1-phosphate

γ-L-glutamyl 5-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

pimeloyl-CoA

8-amino-7-oxononanoate

urocanate

1-deoxy-L-glycero-tetrulose 4-phosphate

O-acetyl-L-serine

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

(S)-mandelate

(R)-mandelate

5-enolpyruvoyl-shikimate 3-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

acetoacetate

prephenate

lipid A disaccharide (E. coli)

nicotinate adenine dinucleotide

L-selenocystathionine

N¹-(5-phospho-β-D-ribosyl)glycinamide

hydrogen peroxide

preuroporphyrinogen

3-phosphooxypyruvate

lipid X

3'-phosphoadenylyl-sulfate

(2-hydroxyphenyl)acetate

homogentisate

4-maleyl-acetoacetate

DNA without lesion

5-phospho-β-D-ribosylamine

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

porphobilinogen

5-amino-6-(D-ribitylamino)uracil

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

urea

N²-succinylglutamate

(R)-mevalonate

(R)-5-phosphomevalonate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

isopentenyl diphosphate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

(S)-dihydroorotate

phosphoenolpyruvate

carboxyphosphate

oxalosuccinate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

shikimate

3-dehydroshikimate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

carbamoyl phosphate

glycerone phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

histidinal

L-histidinol phosphate

histidinol

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

citrate

xanthine

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

oxaloacetate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

coproporphyrinogen III

H₂O

CO₂

4-amino-2-methyl-5-pyrimidinemethanol

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

aminoacetone

1-piperideine 6-carboxylate

DNA with lesion

L-homocysteine

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

Mg-protoporphyrin

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

preQ₀

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

ammonium

H⁺

Fe²⁺

Mg²⁺

Cu²⁺

selenite

OH^-

thiosulfate

sulfite

superoxide

sulfate

hydrogencarbonate

selenate

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

glycine betaine

2-aminoprop-2-enoate

agmatine

putrescine

dehydrospermidine

spermidine

S-(hydroxymethyl)glutathione

thiocyanate

glutathione

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

isovaleryl-CoA

4-hydroxybutanoyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

malonyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

(S)-malyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

propanoyl-CoA

lauroyl-CoA

stearoyl-CoA

cis-vaccenoyl-CoA

palmitoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

nicotinate

riboflavin

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

dAMP

dGMP

adenosine 3'-monophosphate

guanosine 3'-monophosphate

5'-deoxyadenosine

dADP

dATP

IDP

ITP

dIDP

dITP

dGDP

dGTP

adenylo-succinate

GDP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

2'-deoxyinosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyadenosine

IMP

GMP

XMP

AMP

GTP

ATP

ADP

isoguanine

8-oxo-dGTP

8-oxo-GTP

adenosine

inosine

guanosine

xanthosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

5-hydroxy-CTP

5-hydroxy-CMP

2-hydroxy-dATP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dTMP

dUMP

CMP

UMP

dTDP

dCDP

dUDP

CDP

UDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

uridine 3'-monophosphate

cytidine-3'-monophosphate

GDP-α-D-mannose

preQ₁

uracil

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

(+)-taxifolin

(+)-dihydrokaempferol

(+)-dihydromyricetin

kaempferol

quercetin

myricetin

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

4-aminobenzoate

methylglyoxal

glycolaldehyde

formaldehyde

acetaldehyde

D-glyceraldehyde

methanol

ethanol

glycerol

1-(β-D ribofuranosyl)nicotinamide

α-Kdo-(2→6)-lipid IV_A

α,α-trehalose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

spirilloxanthin

2-hydroxyspirilloxanthin

2,2-dihydroxyspirilloxanthin

spheroiden-2-ol

2,2-dihydroxyspheroidene

spheroidene

spheroiden-2-one

demethylspheroidene

demethylspheroidenone

2'-hydroxy-2-oxospirilloxanthin

2',2'-dihydroxy-2-oxospirilloxanthin

2,2'-dioxospirilloxanthin

2-oxospirilloxanthin

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

chorismate

L-aspartate

succinate

fumarate

(S)-malate

cis-aconitate

D-threo-isocitrate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

acetate

formate

(R)-lactate

laurate

4-hydroxybutanoate

palmitate

stearate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

(R)-pantoate

L-kynurenine

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-cysteine

L-tyrosine

L-threonine

L-asparagine

L-glutamine

glycine

L-arginine

L-lysine

L-histidine

L-glutamate

L-methionine

L-valine

L-alanine

L-isoleucine

L-leucine

L-proline

L-phenylalanine

L-tryptophan

β-alanine

D-glutamate

D-alanine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

L-saccharopine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-homoserine

hypoglycin A

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine