ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C1010

ammonia

C12274

enol-phenylpyruvate

C9431

1,2-dihydro-β-NADP

C1553

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

C13543

mercuriphenyl acetate

C12056

L-arginino-succinate

C12492

1,6-anhydro-N-acetyl-β-muramate

C12494

N-acetyl-D-muramate 6-phosphate

C15156

dialurate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C1024

aminoacetone

C891

citrate

C12096

isochorismate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C6099

lipid IVA

C13950

pimeloyl-CoA

C1130

8-amino-7-oxononanoate

C11754

propanoyl phosphate

C11802

4'-phosphopantetheine

C9422

nicotinate adenine dinucleotide

C1528

2-dehydropantoate

C13635

β-D-ribosylnicotinate

C11557

urocanate

C10260

ADP-D-glycero-β-D-manno-heptose

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12139

preuroporphyrinogen

C11767

porphobilinogen

C12214

(S)-4-amino-5-oxopentanoate

C1231

5-aminolevulinate

C12230

formamide

C855

coenzyme F390-A

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C15282

D-galactosamine-6-phosphate

C12044

L-histidinol phosphate

C12176

histidinol

C3482

dihydroxyacetone

C3417

(S)-3-methyl-2-oxopentanoate

C3319

4-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C15181

(S)-5-amino-3-oxohexanoate

C14218

L-β-lysine

C623

(3S,5S)-3,5-diaminohexanoate

C11604

thiamine diphosphate

C14074

prenyl diphosphate

C11711

(R)-1-amino-2-propanol O-2-phosphate

C1353

3-phosphooxypyruvate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C12848

N5-carboxyaminoimidazole ribonucleotide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C11653

shikimate

C11652

shikimate 3-phosphate

C1325

4-amino-4-deoxychorismate

C12352

(S)-dihydroorotate

C10261

ADP-L-glycero-β-D-manno-heptose

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C1538

2-C-methyl-D-erythritol 4-phosphate

C933

L-canavanine

C949

lipid X

C10794

lipid A disaccharide (E. coli)

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12215

(E)-glutaconate

C13850

hydrogenobyrinate a,c-diamide

C11773

phosphocholine

C7865

urea

C13928

urea-1-carboxylate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C13627

DNA without lesion

C1285

4-imidazolone-5-propanoate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C11483

glycolate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C927

carbon monoxide

C1108

acetyl phosphate

C1038

α-ribazole

C12315

5,6-dimethylbenzimidazole

C1036

α-ribazole 5'-phosphate

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C873

coproporphyrinogen III

C11857

β-nicotinate D-ribonucleotide

C11715

quinolinate

C12162

hydrogen peroxide

C11635

L-tartrate

C12364

isopentenyl diphosphate

C12369

3-dehydroquinate

C1431

3-dehydroshikimate

C12254

ethanolamine

C12048

γ-L-glutamyl 5-phosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C13851

hydrogenobyrinate

C1184

5-phospho-β-D-ribosylamine

C6444

oxaloacetate

C11479

phosphoenolpyruvate

C6361

acetoacetate

C2191

carbamoyl phosphate

C14924

carboxyphosphate

C11832

orotidine 5'-phosphate

C928

CO2

C12218

α-D-glucosamine 1-phosphate

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C3684

3-deoxy-α-D-manno-2-octulosonate

C10349

glycerone phosphate

C11539

xanthine

C11543

H2O

C10799

DNA with lesion

C803

ethylphosphate

C5221

adenosylcobalamin

C9874

cob(I)alamin

C9823

cob(I)yrinate a,c-diamide

C9869

cob(I)inamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9800

adenosylcobyrate

C9811

cob(II)yrinate c-monoamide

C9861

cobyrinate

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C9828

cob(II)yrinate a,c-diamide

C9865

Mg-protoporphyrin

C1218

adenosylcobalamin 5'-phosphate

C9807

adenosylcobinamide

C9855

adenosyl-cobinamide phosphate

C9830

adenosylcobinamide-GDP

C6624

protoheme

C7662

uroporphyrinogen-I

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C7666

protoporphyrinogen IX

C7111

Hg0

C7121

oxygen

C6599

2-iminobutanoate

C6708

2-iminopropanoate

C6596

2-iminosuccinate

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2017

α-D-glucosamine 6-phosphate

C6617

N-acetyl-D-mannosamine 6-phosphate

C6744

CMP-N-acetyl-β-neuraminate

C8186

(R)-2-hydroxyglutarate

C13354

preQ0

C12980

4-nitrophenyl phosphate

C12862

4-nitrophenol

C4960

N-acetyl-β-neuraminate

C7306

5'-deoxy-5'-fluoroadenosine

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C4328

ammonium

C4326

Na+

C4320

H+

C11023

Fe2+

C11006

Co2+

C11009

Mg2+

C11002

Hg2+

C7036

hydrogencarbonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C9077

(2E,6E)-farnesyl diphosphate

C2774

pristanate

C11222

sn-glycero-3-phosphoethanolamine

C11219

glycerophosphoserine

C11220

glycerophosphoglycerol

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C3576

cadaverine

C4678

glutathione

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C12587

L-cysteate

C12637

3-sulfopyruvate

C4580

(R)-S-lactoylglutathione

C4913

malonyl-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C2242

(S)-3-aminobutanoyl-CoA

C4981

CoA-disulfide

C4937

3'-dephospho-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C4901

succinyl-CoA

C5298

acetyl-CoA

C1337

crotonyl-CoA

C11400

phytenoyl-CoA

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C5635

oleoyl-CoA

C11187

7-hydroxylauroyl-CoA

C480

18-hydroxystearoyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C491

18-hydroxyoleoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C14697

decanoyl-CoA

C14674

lauroyl-CoA

C14677

octanoyl-CoA

C5885

stearoyl-CoA

C5892

palmitoyl-CoA

C2873

pristanoyl-CoA

C6562

hexadecanedioyl-CoA

C2008

acetoacetyl-CoA

C10994

thiamine

C10988

riboflavin

C10982

nicotinate

C14624

5,10-methylene-tetrahydromethanopterin

C14603

tetrahydromethanopterin

C10053

FAD

C10049

FMNH2

C10052

FMN

C5394

(R)-NADHX

C5392

(S)-NADHX

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C1680

menaquinol-8

C1863

demethylmenaquinol-8

C7823

dADP

C7807

dGDP

C10267

pppGpp

C10266

ppGpp

C7827

GMP

C5552

5'-deoxyadenosine

C7809

AMP

C7751

dGTP

C7783

dATP

C7811

XMP

C7741

IMP

C10288

adenylo-succinate

C7757

ADP

C7795

GDP

C7745

GTP

C7755

2'-deoxyinosine

C7848

2'-deoxyguanosine

C7785

hypoxanthine

C7813

2'-deoxyadenosine

C7844

ATP

C1804

P1,P4-bis(5'-adenosyl) tetraphosphate

C15085

guanosine

C15088

adenosine

C15091

inosine

C15094

xanthosine

C2706

uridine

C2702

cytidine

C1817

cyclic di-3',5'-guanylate

C8764

dTTP

C8772

dCTP

C8724

dUTP

C8761

CTP

C8760

UTP

C8770

dUMP

C8744

dTMP

C8755

dCMP

C2245

CMP

C2241

UMP

C8752

dUDP

C8720

dTDP

C8733

dCDP

C8732

CDP

C8714

UDP

C4243

β-nicotinamide D-ribonucleotide

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C10263

ADP-α-D-glucose

C9540

preQ1

C8739

uracil

C9455

guanine

C9454

adenine

C13346

CDP-choline

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C7780

UDP-α-D-glucose

C1939

dTDP-α-D-glucose

C7804

UDP-α-D-galactofuranose

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C8666

UDP-α-D-galactose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10614

coenzyme A

C2239

oxidized coenzyme F420-2

C4985

(S)-1-pyrroline-5-carboxylate

C2300

precorrin-5

C2320

precorrin-4

C2314

precorrin-3B

C2305

precorrin-1

C2323

precorrin-7

C2311

precorrin-2

C2302

precorrin-3A

C2317

precorrin-6B

C2308

precorrin-6A

C2297

precorrin-8x

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C11481

orotate

C7019

benzene

C3093

urate

C8413

indole

C12836

phenol

C11409

2,3-dihydroxybenzoate

C8974

4-aminobenzoate

C6090

methylglyoxal

C3485

butan-1-al

C9494

D-glyceraldehyde

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C3450

ethanol

C3449

butan-1-ol

C3731

glycerol

C4086

1-(β-D ribofuranosyl)nicotinamide

C10235

heptosyl-Kdo2-lipid A

C10234

(heptosyl)2-Kdo2-lipid A

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C13570

N-acetyl-β-D-mannosamine

C5286

N-acetyl-β-D-glucosamine

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8811

α-D-glucopyranose 1-phosphate

C5615

D-glyceraldehyde 3-phosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C8699

D-arabinofuranose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C10604

D-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C550

18-hydroxystearate

C553

16-hydroxypalmitate

C538

18-hydroxyoleate

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C10025

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

C10024

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C8321

geranyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8950

chorismate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C2802

(S)-malate

C8923

α,ω-9Z-octadecenedioate

C3345

3-phenyl-2-oxopropanoate

C3308

pyruvate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C11517

acetate

C3421

formate

C6185

(R)-lactate

C3418

butanoate

C3412

decanoate

C3207

7-hydroxylaurate

C3415

laurate

C3409

octanoate

C11212

(R)-3-hydroxybutanoate

C13266

(15Z)-tetracosenoate

C6379

linoleate

C10590

α-linolenate

C3387

stearate

C3383

palmitate

C13210

oleate

C13260

phytenate

C11482

(R)-pantoate

C5032

carbamate

C5579

L-serine

C5573

L-tyrosine

C5577

L-threonine

C5643

L-asparagine

C5609

L-glutamine

C12067

glycine

C5642

L-arginine

C5605

L-histidine

C5584

L-lysine

C5607

L-glutamate

C5583

L-methionine

C5588

L-leucine

C5575

L-tryptophan

C2469

L-phenylalanine

C5571

L-valine

C5581

L-proline

C5597

L-alanine

C5603

L-isoleucine

C11441

β-alanine

C11435

(R)-β-lysine

C8797

D-glutamate

C8799

D-alanine

C5601

L-isoglutamine

C12073

L-aspartyl-4-phosphate

C5580

L,L-diaminopimelate

C12231

L-ornithine

C13322

N-carbamoyl-L-aspartate

C5476

formyl-L-isoglutamine

C5466

N-formimino-L-glutamate

C12201

L-2-amino-3-oxobutanoate

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C6532

(2S, 3S)-3-methylaspartate

C10821

trans-4-hydroxy-L-proline

C12303

L-citrulline

C12239

L-aspartate 4-semialdehyde

C12237

L-canaline

C12245

L-homoserine

C12229

O-phospho-L-homoserine

C12203

S-adenosyl-L-homocysteine

C12233

L-glutamate-5-semialdehyde

C15292

S-adenosyl-L-methionine

C5585

meso-diaminopimelate

C9505

L-allo-threonine

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C1434

D-alanyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine